View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4147_low_9 (Length: 437)

Name: NF4147_low_9
Description: NF4147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4147_low_9
NF4147_low_9
[»] chr2 (11 HSPs)
chr2 (73-288)||(33861403-33861613)
chr2 (364-433)||(33862178-33862247)
chr2 (14-68)||(33861303-33861357)
chr2 (82-175)||(34691398-34691491)
chr2 (82-175)||(34713810-34713903)
chr2 (14-68)||(16232641-16232692)
chr2 (14-68)||(34691292-34691343)
chr2 (14-68)||(34713704-34713755)
chr2 (84-166)||(16232749-16232831)
chr2 (204-252)||(34691507-34691555)
chr2 (204-252)||(34713919-34713967)
[»] chr4 (3 HSPs)
chr4 (73-176)||(19964610-19964713)
chr4 (72-174)||(4232030-4232132)
chr4 (14-53)||(4231934-4231973)
[»] chr1 (22 HSPs)
chr1 (78-174)||(45983332-45983428)
chr1 (78-259)||(45993040-45993208)
chr1 (72-174)||(3301293-3301395)
chr1 (77-174)||(43084443-43084540)
chr1 (73-169)||(38137485-38137581)
chr1 (73-177)||(7890661-7890765)
chr1 (77-174)||(43046015-43046112)
chr1 (13-68)||(40034467-40034519)
chr1 (78-174)||(51292184-51292280)
chr1 (73-151)||(7888422-7888500)
chr1 (14-52)||(43066455-43066493)
chr1 (202-259)||(45983260-45983317)
chr1 (13-68)||(45983479-45983531)
chr1 (14-68)||(7888546-7888597)
chr1 (14-68)||(7890811-7890862)
chr1 (14-68)||(45993259-45993310)
chr1 (91-174)||(40034320-40034403)
chr1 (14-53)||(51292082-51292121)
chr1 (14-52)||(43045461-43045499)
chr1 (14-52)||(43045914-43045952)
chr1 (14-52)||(43084342-43084380)
chr1 (220-252)||(43076364-43076396)
[»] chr5 (3 HSPs)
chr5 (90-174)||(16352209-16352293)
chr5 (14-52)||(16349606-16349644)
chr5 (202-251)||(16352338-16352387)
[»] chr8 (9 HSPs)
chr8 (84-165)||(4620265-4620346)
chr8 (202-259)||(4787055-4787112)
chr8 (90-174)||(4787130-4787214)
chr8 (14-53)||(4620157-4620196)
chr8 (202-259)||(4298153-4298209)
chr8 (14-68)||(1846859-1846910)
chr8 (73-174)||(1846956-1847060)
chr8 (13-68)||(4787277-4787329)
chr8 (97-165)||(4298061-4298129)
[»] chr6 (4 HSPs)
chr6 (72-174)||(7519339-7519441)
chr6 (72-174)||(7528710-7528812)
chr6 (15-52)||(7519499-7519536)
chr6 (15-52)||(7528870-7528907)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 73 - 288
Target Start/End: Original strand, 33861403 - 33861613
Alignment:
Q  73 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaact 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33861403 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttcccagagtcaacatgaccaataaccacaatgttaatatgaaact 33861502  T
Q  173 ttggcgttggcttacccattattagtccttccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagacaagacatgagtaaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  33861503 ttggcgttggcttacccattattagtccttccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaaca-----acaagacatgagtaaa 33861597  T
Q  273 ataaataaatctcagt 288  Q
    ||||||||||||||||    
T  33861598 ataaataaatctcagt 33861613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 364 - 433
Target Start/End: Original strand, 33862178 - 33862247
Alignment:
Q  364 ttagccgtaaattctgtttcaatttcaaattatatatatagttttctacttacggagtcgccctttgtta 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33862178 ttagccgtaaattctgtttcaatttcaaattatatatatagttttctacttacggagtcgccctttgtta 33862247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 33861303 - 33861357
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33861303 acctctttcacgctcagcctcgagcttgtcaagaacccaattagcatacttgaat 33861357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 34691398 - 34691491
Alignment:
Q  82 tcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaactttg 175  Q
    ||||||| |||||||||||  | ||||||||| |  || |||||||||| |||||  ||||||||||||| ||||||||| ||||||| |||||    
T  34691398 tcaatacctccaagcttgtaaatcaaatgaccagccgtagttgacttcccagagttgacatgaccaataaacacaatgttgatatgaacctttg 34691491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 34713810 - 34713903
Alignment:
Q  82 tcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaactttg 175  Q
    ||||||| |||||||||||  | ||||||||| |  || |||||||||| |||||  ||||||||||||| ||||||||| ||||||| |||||    
T  34713810 tcaatacctccaagcttgtaaatcaaatgaccagccgtagttgacttcccagagttgacatgaccaataaacacaatgttgatatgaacctttg 34713903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 16232641 - 16232692
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    ||||||||||||||||||||||||||||||||| |||||   |||||||||||||    
T  16232641 acctctttcacgctcagccttgagcttgtcaagcaccca---agcatacttgaat 16232692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 34691292 - 34691343
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    |||||||||||||||||| |||||||||||||| |||||   |||||||||||||    
T  34691292 acctctttcacgctcagcgttgagcttgtcaagcaccca---agcatacttgaat 34691343  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 34713704 - 34713755
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    |||||||||||||||||| |||||||||||||| |||||   |||||||||||||    
T  34713704 acctctttcacgctcagcgttgagcttgtcaagcaccca---agcatacttgaat 34713755  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 16232749 - 16232831
Alignment:
Q  84 aatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatat 166  Q
    ||||| |||||||||||  |||||||||||||  || |||||||||| ||| |  |||||||||||||  |||||||| ||||    
T  16232749 aatacctccaagcttgtaaagcaaatgaccggcagtagttgacttcccagaattgacatgaccaataaagacaatgttgatat 16232831  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 34691507 - 34691555
Alignment:
Q  204 cttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaa 252  Q
    ||||||||||||||  |||| ||||||| |||||||||| |||||||||    
T  34691507 cttaaacttgaaatctcaaacagatctgtcaattcaacacagaaaacaa 34691555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 34713919 - 34713967
Alignment:
Q  204 cttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaa 252  Q
    ||||||||||||||  |||| ||||||| |||||||||| |||||||||    
T  34713919 cttaaacttgaaatctcaaacagatctgtcaattcaacacagaaaacaa 34713967  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 19964713 - 19964610
Alignment:
Q  73 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaact 172  Q
    ||||| ||||||||| ||||||||||||||| ||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||    
T  19964713 acatggttgtcaatatatccaagcttgtggatcaagtgaccagtagtggttgacttcccagagtcaacatgaccaataaccacaatgttaacatgaatct 19964614  T
Q  173 ttgg 176  Q
    ||||    
T  19964613 ttgg 19964610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 4232030 - 4232132
Alignment:
Q  72 cacatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaac 171  Q
    |||| |||||||||||| ||||||||||| || ||| ||||| || || |||||||||| |||||| ||||| ||||| || ||||||||||| |||| |    
T  4232030 cacacgcttgtcaatacctccaagcttgtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaacc 4232129  T
Q  172 ttt 174  Q
    |||    
T  4232130 ttt 4232132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 4231934 - 4231973
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaa 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4231934 acctctttcacgctcagccttgagcttgtcaagaacccaa 4231973  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 45983428 - 45983332
Alignment:
Q  78 cttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 174  Q
    ||||| |||||||||||| ||||||| ||||||||| || |||||||||||||  ||||| ||||||||||||||||||||||||||| ||| ||||    
T  45983428 cttgtgaatacatccaagtttgtggatcaaatgaccagtagtggttgacttcccggagtccacatgaccaataaccacaatgttaatacgaaccttt 45983332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 45993208 - 45993040
Alignment:
Q  78 cttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaactttggc 177  Q
    ||||| |||||||||||| |||||||  |||||||| || |||||||||||||  ||||| ||||||||||||||||||||| ||||| ||| ||         
T  45993208 cttgtgaatacatccaagtttgtggatgaaatgaccagtagtggttgacttcccggagtcgacatgaccaataaccacaatgctaataggaacct----- 45993114  T
Q  178 gttggcttacccattattagtccttccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagaca 259  Q
     ||  |||| ||||||        ||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||||||    
T  45993113 -tttccttatccatta-------gtccttaaacttgaaatcacaaaaagatctgcgaattcaacacagaaaacaacaagaca 45993040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 3301293 - 3301395
Alignment:
Q  72 cacatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaac 171  Q
    |||| |||||||||||| ||||||||||| || ||| |||||||| |||||||||||||  ||||| ||||||||||| || ||||||||||| |||| |    
T  3301293 cacacgcttgtcaatacctccaagcttgtagatcaagtgaccggtggtggttgacttcccggagtcgacatgaccaatgacaacaatgttaatgtgaacc 3301392  T
Q  172 ttt 174  Q
    |||    
T  3301393 ttt 3301395  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 43084443 - 43084540
Alignment:
Q  77 gcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 174  Q
    |||||||||||| ||||||||||| || ||| ||||| ||||||||||| |||| |||||||||||| ||||| ||||||||||| || |||| ||||    
T  43084443 gcttgtcaatacctccaagcttgtagatcaagtgaccagttgtggttgatttcccagagtcaacatggccaatgaccacaatgttgatgtgaaccttt 43084540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 38137581 - 38137485
Alignment:
Q  73 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaa 169  Q
    |||| ||| ||||||| |||||| |||| || ||||||||| |  || |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  38137581 acatccttttcaatacctccaagtttgtagatcaaatgaccagcagtagttgacttcccagagtcaacatgaccaataaccacaacgttaatatgaa 38137485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 7890765 - 7890661
Alignment:
Q  73 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaact 172  Q
    |||| ||| ||||||| ||||||||||| || ||||||||| |  || ||||||||||  ||||| ||||||||||||| || |||||||||| ||||||    
T  7890765 acatccttttcaatacctccaagcttgtagatcaaatgaccagccgtcgttgacttcccggagtcgacatgaccaataaacagaatgttaataggaaact 7890666  T
Q  173 ttggc 177  Q
    |||||    
T  7890665 ttggc 7890661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 43046015 - 43046112
Alignment:
Q  77 gcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 174  Q
    |||||||||||| ||||||||||| || ||| ||||| || |||||||| |||| |||||| ||||| ||||| ||||||||||| || |||| ||||    
T  43046015 gcttgtcaatacctccaagcttgtagatcaagtgaccagtggtggttgatttcccagagtcgacatggccaatgaccacaatgttgatgtgaaccttt 43046112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 40034519 - 40034467
Alignment:
Q  13 cacctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    |||||||||||||||||||||||||||||||||| |||||   |||||||||||||    
T  40034519 cacctctttcacgctcagccttgagcttgtcaagtaccca---agcatacttgaat 40034467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 51292184 - 51292280
Alignment:
Q  78 cttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 174  Q
    ||||||||||| ||||||||||| || ||||||||| |  ||  ||||||| | | |||| ||||||||||||| ||||||||||||| ||| ||||    
T  51292184 cttgtcaatacctccaagcttgtagatcaaatgaccagcagtatttgactttccatagtcgacatgaccaataaacacaatgttaatacgaaccttt 51292280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 7888500 - 7888422
Alignment:
Q  73 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataa 151  Q
    |||| ||| ||||||| ||||||||||| || ||||||||| |  |||||||||||||  || ||||||||||||||||    
T  7888500 acatccttttcaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccggaatcaacatgaccaataa 7888422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 43066493 - 43066455
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaaccca 52  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  43066493 acctctttcacgttcagccttgagcttgtcaagaaccca 43066455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 45983317 - 45983260
Alignment:
Q  202 tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagaca 259  Q
    ||||||||||||||||  |||||| |||||||||||||||| |||||  |||||||||    
T  45983317 tccttaaacttgaaatcacaaaaatatctgccaattcaacacagaaagtaacaagaca 45983260  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 45983531 - 45983479
Alignment:
Q  13 cacctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    ||||||||||||| |||||||||||||||||||| |||||   |||||||||||||    
T  45983531 cacctctttcacgttcagccttgagcttgtcaagcaccca---agcatacttgaat 45983479  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 7888597 - 7888546
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    |||||||||||||||||||||||| |||||||| |||||   |||||||||||||    
T  7888597 acctctttcacgctcagccttgagtttgtcaagcaccca---agcatacttgaat 7888546  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 7890862 - 7890811
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    ||||||||||||||| ||||||||||||||||| |||||   |||||||||||||    
T  7890862 acctctttcacgctcggccttgagcttgtcaagcaccca---agcatacttgaat 7890811  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 45993310 - 45993259
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    ||||||||||||||||| ||||||||||||||| |||||   |||||||||||||    
T  45993310 acctctttcacgctcagtcttgagcttgtcaagcaccca---agcatacttgaat 45993259  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 40034403 - 40034320
Alignment:
Q  91 ccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 174  Q
    |||||||||| || |||||||||    ||||||||||||| |||||| |||| ||||||||  || ||||||||||||| ||||    
T  40034403 ccaagcttgtagatcaaatgaccaccagtggttgacttcccagagtcgacattaccaataaatacgatgttaatatgaaccttt 40034320  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 51292082 - 51292121
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaa 53  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  51292082 acctctttcacgctcagccttgaacttgtcaagcacccaa 51292121  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 43045461 - 43045499
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaaccca 52  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  43045461 acctctttcacgttcagccttgagcttgtcaaggaccca 43045499  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 43045914 - 43045952
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaaccca 52  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  43045914 acctctttcacgttcagccttgagcttgtcaaggaccca 43045952  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 43084342 - 43084380
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaaccca 52  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  43084342 acctctttcacgttcagccttgagcttgtcaaggaccca 43084380  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 43076396 - 43076364
Alignment:
Q  220 caaaaagatctgccaattcaacaaagaaaacaa 252  Q
    |||||| ||||||||||||||||||||||||||    
T  43076396 caaaaatatctgccaattcaacaaagaaaacaa 43076364  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 16352209 - 16352293
Alignment:
Q  90 tccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 174  Q
    ||||||||||| || |||||||||||  ||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||    
T  16352209 tccaagcttgtagaacaaatgaccggcggtggttgacttcccagagttgacatgaccaataaccacaatgttaatatgaaccttt 16352293  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 16349606 - 16349644
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaaccca 52  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  16349606 acctctttcgcgctcagccttgagtttgtcaagaaccca 16349644  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 16352338 - 16352387
Alignment:
Q  202 tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaaca 251  Q
    ||||||||||||||||   ||||| |||||||||||||||| ||||||||    
T  16352338 tccttaaacttgaaatcataaaaatatctgccaattcaacacagaaaaca 16352387  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 4620265 - 4620346
Alignment:
Q  84 aatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaata 165  Q
    ||||| ||||||||||| || ||||||||| |  ||||||||||||| |||||| ||||||||||||| |||||| ||||||    
T  4620265 aatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaata 4620346  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 4787112 - 4787055
Alignment:
Q  202 tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagaca 259  Q
    ||||||||||||||||  |||||||||||||||||| |||| |||||| |||||||||    
T  4787112 tccttaaacttgaaatcacaaaaagatctgccaattgaacacagaaaataacaagaca 4787055  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 4787214 - 4787130
Alignment:
Q  90 tccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 174  Q
    ||||||||||| |||||||||| | || |||||||||||||  ||||   | |||||||||||||||||||||||| ||| ||||    
T  4787214 tccaagcttgtagagcaaatgagcagtggtggttgacttcccggagttggcttgaccaataaccacaatgttaatacgaaccttt 4787130  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 4620157 - 4620196
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaa 53  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  4620157 acctctttcacgctcagccttgagcttgtcaagcacccaa 4620196  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 4298153 - 4298209
Alignment:
Q  202 tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagaca 259  Q
    |||||||| |||||||  ||||||||||||||||||||||| |||||| |||||||||    
T  4298153 tccttaaa-ttgaaatcacaaaaagatctgccaattcaacacagaaaataacaagaca 4298209  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 1846859 - 1846910
Alignment:
Q  14 acctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    ||||||||||||||| ||||||||||||||||| |||||   |||||||||||||    
T  1846859 acctctttcacgctcggccttgagcttgtcaagcaccca---agcatacttgaat 1846910  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 1846956 - 1847060
Alignment:
Q  73 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatg---accaataaccacaatgttaatatgaa 169  Q
    |||| ||| ||||||| ||||||||||| || ||||||||| |  || ||||||||||  ||||| |||||   |||||||| || |||||||||| |||    
T  1846956 acatccttttcaatacctccaagcttgtagatcaaatgaccagccgtcgttgacttcccggagtcgacatgaccaccaataaacagaatgttaataggaa 1847055  T
Q  170 acttt 174  Q
    |||||    
T  1847056 acttt 1847060  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 4787329 - 4787277
Alignment:
Q  13 cacctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 68  Q
    ||||||||||||||||| ||||||| |||||||| |||||   |||||||||||||    
T  4787329 cacctctttcacgctcacccttgagtttgtcaagcaccca---agcatacttgaat 4787277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 4298061 - 4298129
Alignment:
Q  97 ttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaata 165  Q
    |||| |||||||||| | || |||||||||||||  ||||   |||| |||||||||||||||||||||    
T  4298061 ttgtagagcaaatgagcagtagtggttgacttcccggagttggcatggccaataaccacaatgttaata 4298129  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 7519441 - 7519339
Alignment:
Q  72 cacatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaac 171  Q
    |||| |||||||||||| ||| ||||||| || ||| ||||| ||||| ||||| || | |||||| ||||| ||||| || |||||||| ||||||| |    
T  7519441 cacacgcttgtcaatacctcctagcttgtagatcaagtgaccagttgttgttgattttccagagtcgacatgtccaatgacaacaatgttgatatgaatc 7519342  T
Q  172 ttt 174  Q
    |||    
T  7519341 ttt 7519339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 7528812 - 7528710
Alignment:
Q  72 cacatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaac 171  Q
    |||| |||||||||||| ||| ||||||| || ||| ||||| ||||| ||||| || | |||||| ||||| ||||| || |||||||| ||||||| |    
T  7528812 cacacgcttgtcaatacctcctagcttgtagatcaagtgaccagttgttgttgattttccagagtcgacatgtccaatgacgacaatgttgatatgaatc 7528713  T
Q  172 ttt 174  Q
    |||    
T  7528712 ttt 7528710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 7519536 - 7519499
Alignment:
Q  15 cctctttcacgctcagccttgagcttgtcaagaaccca 52  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7519536 cctctttcacgctcagccttaagcttgtcaagaaccca 7519499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 7528907 - 7528870
Alignment:
Q  15 cctctttcacgctcagccttgagcttgtcaagaaccca 52  Q
    |||||||||||||||||||| || ||||||||||||||    
T  7528907 cctctttcacgctcagccttaagtttgtcaagaaccca 7528870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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