View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_high_11 (Length: 361)
Name: NF4148_high_11
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 16510490 - 16510149
Alignment:
| Q |
8 |
ttataccttactaacaacattatttcttgcatcatttcaagcttatacggtgtagcaatgcatcgtcctcgaaccttaacatttccagattgcacaagag |
107 |
Q |
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| T |
16510490 |
ttatacctcactaacaacattatttcctgcatcatttcaagcttatacggtgtagcaatgcatcgtcctcgaaccttaacatttccagattgcacaaggg |
16510391 |
T |
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| Q |
108 |
gaatcacagatttagcccattccattggcagcctcccaacctttagagtcaaacacaccaagataacaaaa--atatcactttcaattccttccaacaaa |
205 |
Q |
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| T |
16510390 |
gaatcacagatttagcccattccattggcagcctcccaacctttagagttaaacacaccaacataacaaaaatatatcactttcaattccttccaacaaa |
16510291 |
T |
|
| Q |
206 |
aacatcaaaacaatctcacattgcattctaaacattgcaatcaataaaataaaatactttaaattctaaacattgcaatcaagaaaataacatactttaa |
305 |
Q |
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|||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16510290 |
aacatcaaaataatttcacattgcattttaaacattgcaatcaataaaataaaatactttaaattctaaacattgcaatcaagaaaataacatactttaa |
16510191 |
T |
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| Q |
306 |
actctaacaataacaaaaatgtaactttttaaggataaaatt |
347 |
Q |
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||| |||| |||||||||||||||||||||| |||||||||| |
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| T |
16510190 |
actttaaccataacaaaaatgtaactttttatggataaaatt |
16510149 |
T |
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