View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4148_high_12 (Length: 348)
Name: NF4148_high_12
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 20211732 - 20212071
Alignment:
| Q |
1 |
aaatatttctacacatgtaatcaatcaaaatggtcatattaattatatacnnnnnnnn--agaacatttgatttaataataagtttttaagtcacatata |
98 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20211732 |
aaatatttctacacgtgtaatcaatcaaaatggtcatattaatcatatacttttttttttagaacatttgatttaataataagtttttaagtcacatata |
20211831 |
T |
|
| Q |
99 |
taaaattgggattcatggatattgtannnnnnnattacattaaaagtgaatcaaaattaaacttattatctatataaatttgataatgttgtttattttc |
198 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20211832 |
taaaattgggattcattgatattgtatttttttattacattaaaagtgaatcaaaattaaacttattatctatataaatttgataatgttgattattttc |
20211931 |
T |
|
| Q |
199 |
ttttttaaatatccactttagaatttcttcatgatgacacatcacttgtctcttgtaatgattattattatctcaatatatgctttgtttataatatttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
20211932 |
ttttttaaatatccactttagaatttcttcatgatgacacatcacttgtctcttgtaatg---attattatctcaatatatgttttgtttataatattat |
20212028 |
T |
|
| Q |
299 |
aaaaagttgttaggatttcatttctcgatatagacctatgata |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20212029 |
aaaaagttgttaggatttcatttctcgatatagacctatgata |
20212071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University