View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4148_high_14 (Length: 340)

Name: NF4148_high_14
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4148_high_14
NF4148_high_14
[»] chr8 (14 HSPs)
chr8 (8-333)||(7956226-7956551)
chr8 (43-330)||(44223215-44223503)
chr8 (43-301)||(17722330-17722596)
chr8 (42-305)||(35948826-35949097)
chr8 (43-250)||(3767625-3767832)
chr8 (42-333)||(9040426-9040718)
chr8 (43-287)||(25456064-25456308)
chr8 (47-193)||(34760832-34760979)
chr8 (136-287)||(25808217-25808368)
chr8 (94-261)||(9505077-9505244)
chr8 (94-287)||(16570794-16570987)
chr8 (47-120)||(20860427-20860500)
chr8 (87-269)||(32321853-32322035)
chr8 (174-250)||(25344101-25344177)
[»] chr1 (13 HSPs)
chr1 (42-333)||(16584750-16585051)
chr1 (86-325)||(1161327-1161565)
chr1 (47-333)||(8083990-8084290)
chr1 (42-333)||(11619933-11620216)
chr1 (45-244)||(25785763-25785962)
chr1 (45-286)||(18461120-18461362)
chr1 (86-323)||(42009880-42010102)
chr1 (94-287)||(11911646-11911839)
chr1 (236-315)||(25787286-25787365)
chr1 (47-95)||(32678554-32678602)
chr1 (43-118)||(4919491-4919566)
chr1 (43-76)||(33857601-33857634)
chr1 (43-76)||(33923289-33923322)
[»] chr2 (12 HSPs)
chr2 (86-333)||(31111466-31111713)
chr2 (45-325)||(13852163-13852453)
chr2 (47-287)||(4638168-4638417)
chr2 (43-328)||(36009179-36009462)
chr2 (46-333)||(38606980-38607275)
chr2 (43-333)||(37630343-37630634)
chr2 (86-333)||(29109042-29109295)
chr2 (43-132)||(27866622-27866710)
chr2 (86-330)||(5526270-5526519)
chr2 (87-191)||(3919883-3919987)
chr2 (72-123)||(10721926-10721977)
chr2 (42-91)||(12894051-12894100)
[»] chr7 (13 HSPs)
chr7 (43-331)||(7352258-7352555)
chr7 (43-331)||(46993258-46993552)
chr7 (43-325)||(39695087-39695370)
chr7 (43-320)||(7994955-7995234)
chr7 (88-221)||(11727326-11727449)
chr7 (86-286)||(46265238-46265436)
chr7 (43-333)||(3996825-3997128)
chr7 (114-266)||(2197623-2197775)
chr7 (88-331)||(48070669-48070918)
chr7 (43-96)||(27227036-27227089)
chr7 (43-250)||(31136158-31136357)
chr7 (174-287)||(35738067-35738178)
chr7 (94-287)||(25545139-25545332)
[»] chr4 (11 HSPs)
chr4 (86-333)||(28319176-28319423)
chr4 (42-331)||(23107789-23108098)
chr4 (86-326)||(24466202-24466448)
chr4 (94-260)||(4413515-4413681)
chr4 (43-333)||(42141257-42141545)
chr4 (86-245)||(8606106-8606265)
chr4 (47-287)||(53393087-53393337)
chr4 (48-123)||(13207472-13207547)
chr4 (137-261)||(8056816-8056939)
chr4 (197-287)||(19682001-19682091)
chr4 (43-92)||(39839104-39839153)
[»] scaffold0879 (1 HSPs)
scaffold0879 (86-326)||(467-713)
[»] chr5 (6 HSPs)
chr5 (86-305)||(19947761-19947980)
chr5 (92-283)||(16746357-16746548)
chr5 (43-325)||(31895896-31896181)
chr5 (43-209)||(16746550-16746726)
chr5 (87-284)||(1498129-1498326)
chr5 (53-111)||(41092105-41092163)
[»] chr3 (13 HSPs)
chr3 (94-286)||(46655576-46655768)
chr3 (46-333)||(44471020-44471323)
chr3 (86-261)||(11503284-11503459)
chr3 (88-170)||(30554588-30554670)
chr3 (88-330)||(44681881-44682129)
chr3 (86-132)||(46892657-46892703)
chr3 (88-184)||(779533-779629)
chr3 (43-333)||(26757593-26757901)
chr3 (202-325)||(46892755-46892884)
chr3 (87-333)||(28550497-28550749)
chr3 (42-250)||(22240516-22240724)
chr3 (88-164)||(44285615-44285691)
chr3 (175-251)||(47831242-47831317)
[»] scaffold0565 (1 HSPs)
scaffold0565 (50-331)||(1729-2013)
[»] scaffold0070 (2 HSPs)
scaffold0070 (43-287)||(13756-14000)
scaffold0070 (43-90)||(33729-33776)
[»] chr6 (8 HSPs)
chr6 (100-287)||(11846307-11846494)
chr6 (113-333)||(9826817-9827043)
chr6 (214-333)||(1208739-1208864)
chr6 (286-333)||(5416284-5416331)
chr6 (86-192)||(23301464-23301570)
chr6 (42-170)||(23585862-23585990)
chr6 (286-329)||(2453993-2454036)
chr6 (285-331)||(26186588-26186634)
[»] scaffold0002 (1 HSPs)
scaffold0002 (42-108)||(344452-344518)
[»] scaffold0564 (1 HSPs)
scaffold0564 (88-190)||(6366-6472)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 7956551 - 7956226
Alignment:
Q  8 ttattttgacacttttgatctacaacaagtacacgtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgac 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||    
T  7956551 ttattttgacacttttgatctacgacaagtacacgtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatattcgac 7956452  T
Q  108 cttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 207  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  7956451 cttgctttgtttggtttgaaaccgattcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaac 7956352  T
Q  208 caatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattc 307  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7956351 caatccgatgataaccatactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaatac 7956252  T
Q  308 attcactttctctcatcttcatctca 333  Q
    |||| ||||||||||| |||||||||    
T  7956251 attctctttctctcatattcatctca 7956226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 43 - 330
Target Start/End: Complemental strand, 44223503 - 44223215
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||  || |||| ||||||| |||| ||||||||  |||||||    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatatatgatcttgtttggttcagtttaaaaccgatctgaaccaa 44223404  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44223403 tcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacaaa 44223304  T
Q  243 tattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaata-ttttttaattcattcactttctctcatcttcatc 330  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  44223303 tattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatacttttttaatccattcactttctctcatcttcatc 44223215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 43 - 301
Target Start/End: Complemental strand, 17722596 - 17722330
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    ||||||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||| || ||||| ||    
T  17722596 taggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccggaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaa 17722497  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17722496 tcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatgataaccacactcattactttactaa 17722397  T
Q  243 tatta--------tcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttt 301  Q
    |||||        |||||||||||||| ||| ||||||| |||||||||||||||||||||| ||||    
T  17722396 tattatcataaattcctacctcacacatactcatggttaggcccaaaattaaacataaaataatttt 17722330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 42 - 305
Target Start/End: Original strand, 35948826 - 35949097
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 131  Q
    ||||||||||||||| |||| |||||||||| |||| ||||||||||||  |||          |||||||||||| ||| |||||||||||||||||||    
T  35948826 gtaggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccg 35948925  T
Q  132 attcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcct 231  Q
    || |||| || || ||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  35948926 atccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgataacaacattcct 35949025  T
Q  232 tattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaat 305  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  35949026 tattttactaatattatcctacct--cacaaacttatggttaggcccaaaattaaacataaaatactttttaat 35949097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 3767832 - 3767625
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    |||| |||||||||||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||| || ||||||||  |||||||  ||||||||    
T  3767832 taggagtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaa 3767733  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
    || ||||||||||| |||||||||||||  ||||||| |||| |||||||    |||||||||||| | |||||| ||||| ||||||  |||||| |||    
T  3767732 tctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactccccattttagtaa 3767633  T
Q  243 tattatcc 250  Q
    ||||||||    
T  3767632 tattatcc 3767625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 333
Target Start/End: Original strand, 9040426 - 9040718
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 141  Q
    |||||||| |||| |||||| | |||||| ||||||||||||||||||||||||||  ||||||||||||| | | | ||||  |||||||     ||||    
T  9040426 gtaggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaaaatgtatccgaccttgccttgataggttcaaaaccga-----acca 9040520  T
Q  142 atcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacta 241  Q
    ||| ||||||||||  |||||||||||||  |||||||||||| ||||||   |||||||||||||| |   |||| ||||| |||| |  |||||||||    
T  9040521 atctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaaccgagttgatgctaaccccacttcccattttacta 9040620  T
Q  242 atattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
     ||||||||  ||||||||| ||||||| ||| || ||||||||      || |||||||| |  ||||||||||||||||||| |||  ||||||||    
T  9040621 ttattatccctcctcacacacacttatgattaggctcaaaattaaagctcaagataaaatactacttaattcattcactttctcccattatcatctca 9040718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 287
Target Start/End: Complemental strand, 25456308 - 25456064
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    ||||||||||||  ||||| |||||| ||||||||   ||| ||||||||| |||  ||||||||||||  |||||| |||  |||||||  |||| |||    
T  25456308 taggggtgtaagaagttcggacaaaatcaatgaaactaaaattccaaaccggaaatgtatccgaccttgtctggttcagttcaaaaccgaaccgaatcaa 25456209  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
    || ||||| ||||  ||||||||||||   |||||||||||| |||||||   ||||||||||| | | | |||| ||||| ||||||  |||||||||     
T  25456208 tctaaaccaatcttgtttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaactgatgctaacctcactccccattttactat 25456109  T
Q  243 tattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
    ||||||||  | ||||||| |||||||  ||||||||||||||||    
T  25456108 tattatccctcttcacacacacttatgagtatgcccaaaattaaa 25456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 34760979 - 34760832
Alignment:
Q  47 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaa-tatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg 145  Q
    |||||||| |||||| |||||||| |||||| ||||| ||||||||||||||| |||| || |||| |||||||||||  ||| |||  |||||||| |     
T  34760979 ggtgtaagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccgaaaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaaccaacct 34760880  T
Q  146 aaaccgatctattttggtttggttcatggtttttcatttcgagatccg 193  Q
    ||||||||||| ||||||||||||| |||||||| |||| ||||||||    
T  34760879 aaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 136 - 287
Target Start/End: Complemental strand, 25808368 - 25808217
Alignment:
Q  136 gaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatt 235  Q
    ||||||||| |||||||||| |||||||||| |||  |||||||||||| |||||||  |||| ||||||| | | |||||| ||||| ||||||| |||    
T  25808368 gaaccaatctaaaccgatcttttttggtttgattctcggtttttcattttgagatccaagaaatcgatgaatcgaaccgatgctaacctcactcctcatt 25808269  T
Q  236 ttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
    ||| || ||||||||  | ||||||| |||||||  |||||| |||||||||    
T  25808268 ttaatattattatccctcttcacacacacttatgagtatgcctaaaattaaa 25808217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 9505077 - 9505244
Alignment:
Q  94 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 193  Q
    ||||||||||| |||||| |||||||| ||  ||| |||  |||||||| | |||||||| || ||||||| |||||  || |||| |||| || ||||     
T  9505077 aaaaaatatccaaccttgtttggttcgattcaaaatcgaaccgaaccaaccaaaaccgatatagtttggttcggttctaggattttaattttgaaatcca 9505176  T
Q  194 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacaca 261  Q
      |||||||| |||| | ||||||  |||| ||||||  |||||| |||||||||||| |||||||||    
T  9505177 acaaaccgataaaccgaaccgatgccaacctcactccccattttagtaatattatccttcctcacaca 9505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 287
Target Start/End: Complemental strand, 16570987 - 16570794
Alignment:
Q  94 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 193  Q
    ||||||||||| |||||| |||||| ||||  |||||||  | |||||| | ||||||||||| ||||||| |||||  | ||||| |||| |||||||     
T  16570987 aaaaaatatccaaccttgtttggtttggttcaaaaccgaaccaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatcca 16570888  T
Q  194 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
       |||||||||||  | |||||| ||||  ||||||  |||||| || ||||||||  ||||||||| | ||||| |||  | ||||||||||    
T  16570887 aagaaccgatgaactgaaccgatgctaacttcactccccattttagtattattatccctcctcacacacatttatgattaaactcaaaattaaa 16570794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 20860500 - 20860427
Alignment:
Q  47 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcg 120  Q
    ||||||||||||||| |||||||| |||||| ||||| | ||||| |||||| |||| ||||||| ||||||||    
T  20860500 ggtgtaagtggttcgaacaaaaccgatgaaaccgaaaattcaaactgaaaaattatctgaccttgtttggttcg 20860427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 269
Target Start/End: Original strand, 32321853 - 32322035
Alignment:
Q  87 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcg 186  Q
    |||||||||||| ||| |||||||| |||||||||||| ||| | |  |||| |||   ||||||||||| ||||||| |||||  ||||||| ||||      
T  32321853 caaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaaaccgaatcaacataaaccgatctaatttggttcggttctcggtttttaatttta 32321952  T
Q  187 agatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatg 269  Q
    |||| |    ||||||| |||||| || ||| ||||| |||||   |||||| ||||||||||   ||||||||| |||||||    
T  32321953 agattcaatgaaccgataaaccaaaccaatgctaacctcactctccattttagtaatattatctctcctcacacacacttatg 32322035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 25344177 - 25344101
Alignment:
Q  174 gtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcc 250  Q
    ||||||||||| ||||| |  ||||| |||||| | | |||||| ||||| ||||||| ||||||||| ||||||||    
T  25344177 gtttttcattttgagattcaagaaacagatgaatctaaccgatgctaacctcactcctcattttactactattatcc 25344101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 42 - 333
Target Start/End: Complemental strand, 16585051 - 16584750
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 131  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||          ||||||||| |||||| |||||||||||||||||||    
T  16585051 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16584952  T
Q  132 attcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcct 231  Q
    || |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  16584951 atccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgataaccaaactcct 16584852  T
Q  232 tattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttcatct 331  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  16584851 tattttactaatattatcatacctcacacaaacttatggttagacccaaaattaaacataaaatactttttaatccattcactttctctaatcttcatct 16584752  T
Q  332 ca 333  Q
    ||    
T  16584751 ca 16584750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 1161565 - 1161327
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    ||||||||||||| |||||||||||  |||||||||||||||||| || | | |||||||||||||||||| ||||||||||||||||||||||||||||    
T  1161565 ccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatctagtttggtttggttcatggtttttcatttc 1161467  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  1161466 gatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttcagcccaaaatta 1161367  T
Q  286 aacataaaatattttttaattcattcactttctctcatct 325  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  1161366 aacataaaatattttttaatccattcactttctcttatct 1161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 47 - 333
Target Start/End: Original strand, 8083990 - 8084290
Alignment:
Q  47 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaac----------cgaaaa-aatatccgaccttgcttggttcggtttgaaaccgattc 135  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||          |||||| |||||||||||||| |||||| ||||||||||| || |    
T  8083990 ggtgtaagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatcc 8084089  T
Q  136 gaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatt 235  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  8084090 gaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgataaccacactccttatt 8084189  T
Q  236 ttactaat---attatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttcatctc 332  Q
    ||||||||    ||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  8084190 ttactaatccatttatcctacctcacacaaactcatggttaggcacaaaattaaacataaaataatttttaatctattcactttctctcatcttcatctc 8084289  T
Q  333 a 333  Q
    |    
T  8084290 a 8084290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 42 - 333
Target Start/End: Original strand, 11619933 - 11620216
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 141  Q
    |||||||||||||||||||| |||||||||| |||| |||||      ||| ||||||||||||| |||| ||||||| ||||||||||||| | ||| |    
T  11619933 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaa------accaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaacta 11620026  T
Q  142 atcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacta 241  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  11620027 atcgaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatgaaccaatccgatgatactcacactacttattttacta 11620126  T
Q  242 atattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
    ||||||||||||||  ||||||||||||||||  ||||||||||||||| ||||| ||||||||  |||||||||||| |||||||||||||    
T  11620127 atattatcctacct--cacaaacttatggttaaacccaaaattaaacatgaaatactttttaatcaattcactttctcccatcttcatctca 11620216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 45 - 244
Target Start/End: Original strand, 25785763 - 25785962
Alignment:
Q  45 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatc 144  Q
    ||||||||||||||||| |||||||||| ||||  |||| | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  25785763 ggggtgtaagtggttcggacaaaaccaacgaaactgaaatttcaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatc 25785862  T
Q  145 gaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaata 244  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  25785863 gaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacattctttattttactaata 25785962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 45 - 286
Target Start/End: Original strand, 18461120 - 18461362
Alignment:
Q  45 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaa-aaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaat 143  Q
    ||||||||||||||||  |||||||||| |||| | |||||||||||| ||  ||||||||||||||| || ||||||||| ||| ||||  | ||||||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaatatccgaccttgtttagttcggtttcaaatcgatctggaccaat 18461219  T
Q  144 cgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaat 243  Q
    | |||||||| || |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  18461220 caaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcattaatttattaat 18461319  T
Q  244 attatcctacctcacacaaacttatggttatgcccaaaattaa 286  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||    
T  18461320 attatccaacctcgcacaaacttatggttaagcccaaaattaa 18461362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 323
Target Start/End: Complemental strand, 42010102 - 42009880
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||| |||||||||||| ||| |||||  ||||||||||||||||     
T  42010102 ccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcatttt 42010003  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    |||||                     ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  42010002 gagat---------------------ccgatgataaccacactccttatattactaatagtatcctacctcacacaaacttatggttaggcctaaaatta 42009924  T
Q  286 -----aacataaaata-ttttttaattcattcactttctctcat 323  Q
         ||||||||||| |||||| || |||||| ||||||||||    
T  42009923 aagtcaacataaaatactttttttatccattcattttctctcat 42009880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 94 - 287
Target Start/End: Original strand, 11911646 - 11911839
Alignment:
Q  94 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 193  Q
    ||||| |||||||||||| |||||||||||  |||||||  |||||||| | ||||||||||| |||| ||| |||| |||||||| |||| || |||||    
T  11911646 aaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtttttaattttgaaatccg 11911745  T
Q  194 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
       |||||||||||||| |||||  ||| | ||||||  |||| | |||||||||||  | |||| || ||||||| ||| || ||||||||||    
T  11911746 atgaaccgatgaaccaaaccgatactaaactcactccccatttgagtaatattatccctcatcacgcacacttatgattaagctcaaaattaaa 11911839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 25787286 - 25787365
Alignment:
Q  236 ttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactt 315  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||| |||||||| ||| |||||    
T  25787286 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcactt 25787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 32678602 - 32678554
Alignment:
Q  47 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 95  Q
    ||||||||||||||| |||||||| |||||||||||| | |||||||||    
T  32678602 ggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaa 32678554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 4919491 - 4919566
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggtt 118  Q
    ||||||||||||||||  | |||||||| | |||| ||||||| |||||||||||  |||| |||||||| |||||    
T  4919491 taggggtgtaagtggtagggacaaaaccgacgaaaccgaaagttcaaaccgaaaaggtatctgaccttgcctggtt 4919566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 33857601 - 33857634
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaa 76  Q
    ||||||||||||||||||| ||||||||||||||    
T  33857601 taggggtgtaagtggttcggacaaaaccaatgaa 33857634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 33923322 - 33923289
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaa 76  Q
    ||||||||||||||||||| ||||||||||||||    
T  33923322 taggggtgtaagtggttcggacaaaaccaatgaa 33923289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 86 - 333
Target Start/End: Original strand, 31111466 - 31111713
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| |||||||||||| |||||||||||||||||||||||||||     
T  31111466 ccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt 31111565  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    ||||||| |||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  31111566 gagatccttgaaaccgataaaccaatctggtgataaccacacttcttattttactaatattatcctacctcacacaaaattatggttaggcgcaaaatta 31111665  T
Q  286 aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||    
T  31111666 aatataaaatactttttaattcattcactttctctcatcttcatctca 31111713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 45 - 325
Target Start/End: Complemental strand, 13852453 - 13852163
Alignment:
Q  45 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccgatt 134  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||  |||          |||||||| ||| ||| ||| |||||||||||||||||     
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatc 13852354  T
Q  135 cgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttat 234  Q
    | |||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||    
T  13852353 caaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttgataaccacactccttat 13852254  T
Q  235 tttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatct 325  Q
    |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13852253 tttattaatattatcttacctcacacaaacttaaggttatgaccaaaattaaacataaaatattttttaatccattcactttctctcatct 13852163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 47 - 287
Target Start/End: Original strand, 4638168 - 4638417
Alignment:
Q  47 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcga 146  Q
    |||||||| |||||  || ||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||| |    
T  4638168 ggtgtaagcggttcagactaaaccaacgaaaccgaaagtccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaa 4638267  T
Q  147 aaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctta----ttttactaa 242  Q
     || ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  4638268 tactgatttagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttaattcttttactaa 4638367  T
Q  243 tattatcctac-----ctcacacaaacttatggttatgcccaaaattaaa 287  Q
    ||||||||| |     |||||||||| |||||||||  ||||||||||||    
T  4638368 tattatcctcctcacactcacacaaaattatggttagacccaaaattaaa 4638417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 43 - 328
Target Start/End: Original strand, 36009179 - 36009462
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    |||||||  |||| ||||| ||||||| || |||||| ||||||||||  |||||||||||||| |||| || ||||||||||||||||||  ||| |||    
T  36009179 taggggttcaagtagttcggacaaaactaacgaaatcaaaagtccaaattgaaaaaatatccgatcttgtttagttcggtttgaaaccgatctgaatcaa 36009278  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
    ||          || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36009279 tc----------tagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaa 36009368  T
Q  243 tattatc--------ctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttca 328  Q
    |||||||        |||||| ||||||| | ||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36009369 tattatcctacatttctaccttacacaaattcatggttaggtccaaaattaaacataaaataatttttaatccattcactttctctcatcttca 36009462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 46 - 333
Target Start/End: Original strand, 38606980 - 38607275
Alignment:
Q  46 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg 145  Q
    ||||||||| |||||  |||||| ||| ||||  | |||||||||||||||| ||||||||||||| ||| |||| ||  |||||||  ||||||||||     
T  38606980 gggtgtaagcggttcagacaaaatcaacgaaactgtaagtccaaaccgaaaatatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatct 38607078  T
Q  146 aaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatat 245  Q
    |||| || ||  ||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||  |||| |||||||||||   ||||||||||| |    
T  38607079 aaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactcgccattttactaatgt 38607178  T
Q  246 tatcctacctcacac----aaacttatggttatgcccaaaatta-----aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
    |||||  ||||||||    | ||||||| ||| |||||||||||     ||||||||||| | |||||| |||||| ||| ||||||| ||||||||    
T  38607179 tatccctcctcacacgcaaacacttatgattaggcccaaaattaagtccaacataaaatactatttaatccattcattttatctcatcatcatctca 38607275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 333
Target Start/End: Original strand, 37630343 - 37630634
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    |||||||||||||| |||| |||||||| |||||| ||||   ||||||||||||| ||||  ||||||||||||| ||||  ||| |||| | ||||||    
T  37630343 taggggtgtaagtgattcggacaaaaccgatgaaaccgaa---ccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaa 37630439  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
     | |||| |||||| |||||||  ||||  ||||||| |||| |||||||    ||||| |||||| |   |||| ||||  ||||||  | |||| |||    
T  37630440 cctaaactgatctagtttggttcagttctcggtttttaattttgagatccaatgaaccggtgaaccgaatggatgctaacatcactccccactttagtaa 37630539  T
Q  243 tattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
    ||||||||  ||||||||  ||||||| ||| || ||||||||      ||||| ||||| || |||||||||||||||||||||||| || |||||    
T  37630540 tattatccctcctcacac--acttatgattaagctcaaaattaaagtccaacatcaaatacttcttaattcattcactttctctcatcatcgtctca 37630634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 333
Target Start/End: Complemental strand, 29109295 - 29109042
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    |||||| |||||| |||||||||||| ||||||| |||  |||||||  |||| ||| | ||||| ||||| |||||||||||||  ||||||| ||||     
T  29109295 ccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccgaaccgaagcaacctaaaccaatctagtttggtttggttctcggtttttaatttt 29109196  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    |||||||    ||||||||||||||  ||||| |||||   || |  |||||| |||||||||||  ||||||||| | ||||  ||| || ||||||||    
T  29109195 gagatccaaagaaccgatgaaccaaatcgatgctaaccttccttcccattttagtaatattatcccccctcacacacaattataattaagctcaaaatta 29109096  T
Q  286 ------aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
          ||||||||||| |  |||||||||||||||||||  ||| ||||||||    
T  29109095 aagtccaacataaaatactccttaattcattcactttctcctatcatcatctca 29109042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 27866622 - 27866710
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 132  Q
    ||||||||||||||||||| |||||| | || ||| ||||| ||||||||| |||| ||||||||||||||||||||||||  |||||||    
T  27866622 taggggtgtaagtggttcggacaaaatcgataaaaccgaaaatccaaaccg-aaaagtatccgaccttgcttggttcggttcaaaaccga 27866710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 330
Target Start/End: Original strand, 5526270 - 5526519
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    ||||||||||||  |||||||||||| || ||||||||  |||| ||  |||||||| | ||||||||||| ||||||| |||||   |||||| ||||     
T  5526270 ccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaaccaacctaaaccgatctagtttggttcggttctcagtttttaatttt 5526368  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    |||||||    ||| |||||||| | |||||| ||| | ||||||  |||||| || ||||||||  ||| ||||| ||||||| |||  | ||||||||    
T  5526369 gagatccaaagaacagatgaaccgaaccgatgctaatctcactccccattttagtattattatccctccttacacacacttatgattaaactcaaaatta 5526468  T
Q  286 ------aacataaaatattttttaattcattcactttctctcatcttcatc 330  Q
          ||||||||||| |  |||||||||||||||||| ||||| |||||    
T  5526469 aagtccaacataaaatactccttaattcattcactttctgtcatcatcatc 5526519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 3919987 - 3919883
Alignment:
Q  87 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcg 186  Q
    ||||||||||||  || |||| ||| |||||| ||||  |||||||  |||||||| | ||||||||||| ||||||||||||| |  ||||| |||| |    
T  3919987 caaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaactaaaccgatctagtttggtttggttcttaatttttaattttg 3919888  T
Q  187 agatc 191  Q
    |||||    
T  3919887 agatc 3919883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 10721926 - 10721977
Alignment:
Q  72 atgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtt 123  Q
    |||||| ||||| |||||||||||||| |||| ||||||| |||||||||||    
T  10721926 atgaaaccgaaaatccaaaccgaaaaagtatctgaccttgtttggttcggtt 10721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 12894100 - 12894051
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaac 91  Q
    |||||||||| ||||||||  |||||||||| |||||| |||||||||||    
T  12894100 gtaggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaac 12894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 43 - 331
Target Start/End: Complemental strand, 7352555 - 7352258
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa----------ccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 132  Q
    ||||||||||| ||||||  |||||||||| |||| ||||||||||||          ||||||||||||||||| ||  |||||| |||||||||||||    
T  7352555 taggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccga 7352456  T
Q  133 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 232  Q
    | ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  7352455 tccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgataaccacactcctt 7352357  T
Q  233 attttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttcatct 331  Q
    ||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  7352356 attttactaatattatcctacgtcacacaaacttatagttagacccaaaattaaacataaaatacgttttaatccattcactttctctcatcttcatct 7352258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 43 - 331
Target Start/End: Original strand, 46993258 - 46993552
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    |||||||| |||||||||| |||||| | ||||||| |||||| |||| | ||||||||| |||||||| |||| |||||||||||  ||| |||| |||    
T  46993258 taggggtggaagtggttcggacaaaatcgatgaaattgaaagttcaaatctaaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaa 46993357  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46993358 tcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgattaaccaatccgatgataaccacactccttattttactaa 46993457  T
Q  243 tattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatct 331  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||      ||||||||||| |||||||| |||||| ||||||||||||||||||    
T  46993458 tattatcgtacctcacacaaacttaaggttaagcccaaaattaaagtccaacataaaatactttttaatccattcaatttctctcatcttcatct 46993552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 43 - 325
Target Start/End: Original strand, 39695087 - 39695370
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa-----accgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcga 137  Q
    |||||||||||||||||||  ||||||||| |||| |||||||||||     |||||| | ||||||||||||| |||||||||||||||||||||  ||    
T  39695087 taggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaacccaaaccgaagagatatccgaccttgtttggttcggtttgaaaccgatctga 39695186  T
Q  138 accaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatttt 237  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  39695187 accaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgataacctcactccttatttt 39695286  T
Q  238 actaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatct 325  Q
    ||    |||||| |||||||||||||||||||||||  ||||||||||||||||||||| ||||| || |||||| ||||||||||||    
T  39695287 ac----attatcttacctcacacaaacttatggttagacccaaaattaaacataaaataatttttcatccattcattttctctcatct 39695370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 43 - 320
Target Start/End: Original strand, 7994955 - 7995234
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    |||||||||||  ||||||||  ||||||| ||||  || ||||||||| ||||||||||  ||||||| |||||||||||  ||| |||| ||||||||    
T  7994955 taggggtgtaaacggttcgtattaaaccaacgaaactgatagtccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaa 7995054  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
    | |||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7995055 ttgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaaccgatgaaccaatccgataataaccacactccttattttactaa 7995154  T
Q  243 tattatcctacctcacacaaacttatggttatgcccaaaatta-----aacataaaatattttttaattcattcactttctct 320  Q
    ||||||| |||||  |||||||||||||||| | |||||||||     |||||| |||| |||||||| |||||| |||||||    
T  7995155 tattatcttacct--cacaaacttatggtta-ggccaaaattaaagtcaacatagaatactttttaatccattcattttctct 7995234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 11727449 - 11727326
Alignment:
Q  88 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcga 187  Q
    |||||||||||||||  ||||||| ||||||||||||||||||          |||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaacc----------aatcaaaaccgatctagtttggtttggttcgtggtttttcatttcga 11727360  T
Q  188 gatccgtgaaaccgatgaaccaatccgatgataa 221  Q
    ||||||| |||||||| |||||||||||||||||    
T  11727359 gatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 46265436 - 46265238
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    ||||||| ||||  ||||||||||||   |||||||||  |||||||  |||| ||||| ||||||||||  ||||||||||||    |||| ||||||     
T  46265436 ccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcatttt 46265337  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    |||||||  ||||||||||||||||  | ||| ||||  ||||||| ||||||||| |||| |||| ||||||||  ||||||| |||||||||||||||    
T  46265336 gagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcattttactattattgtccttcctcacac--acttatgattatgcccaaaatta 46265239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 333
Target Start/End: Complemental strand, 3997128 - 3996825
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa----------accgaaaaaatatccgaccttgcttggttcggtttgaaaccga 132  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||          |||||| ||  ||||||| ||| |||||| ||||  |||||||    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaaccga 3997029  T
Q  133 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 232  Q
      | |||||||| ||||| | ||  ||||||| ||||| | | ||||||||| |||||||  | |||| ||||||| | ||| || ||||  ||||||      
T  3997028 acctaaccaatctaaaccaaccttgtttggttcggttc-tcggttttcattttgagatccaaggaacctatgaaccgaaccgttggtaactccactccca 3996930  T
Q  233 attttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa------cataaaatattttttaattcattcactttctctcatctt 326  Q
    |||||||||||| || |   ||||||||  ||||||| |||||||||||||||||      ||||||||| || |||| |||||||||||||||| || |    
T  3996929 attttactaataataactctcctcacac--acttatgattatgcccaaaattaaagtcaagcataaaatacttcttaagtcattcactttctctcgtcat 3996832  T
Q  327 catctca 333  Q
    |||||||    
T  3996831 catctca 3996825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 266
Target Start/End: Complemental strand, 2197775 - 2197623
Alignment:
Q  114 tggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcc 213  Q
    ||||||||||  ||||||||  ||||||||| ||| ||| ||  |||| || |||||  |||||||||||| |||||||  ||||||||| |||||| ||    
T  2197775 tggttcggttctaaaccgatctgaaccaatctaaatcgaccttgtttgattgggttctcggtttttcattttgagatccaagaaaccgatcaaccaaacc 2197676  T
Q  214 gatgataaccacactccttattttactaatattatcctacctcacacaaactt 266  Q
    |||| ||||  ||||||  ||||||||||||||||||| |||| |||| ||||    
T  2197675 gatgctaacttcactccccattttactaatattatccttcctcgcacacactt 2197623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 331
Target Start/End: Original strand, 48070669 - 48070918
Alignment:
Q  88 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcga 187  Q
    ||||| |||||||||||||||||| ||| || ||||  |||||||  ||||| || | ||||||||||| |||| || |||||  ||||||| |||| ||    
T  48070669 aaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccgaaccgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttga 48070768  T
Q  188 gatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta-- 285  Q
    |||||    ||||||| |||  | |||||| ||||| |||||   |||| | ||||| |||||  | ||||||| ||||||| |||  | ||||||||      
T  48070769 gatccaaagaaccgataaactgaaccgatgttaacctcactcaccatttcagtaataatatccctcttcacacacacttatgattaatctcaaaattaaa 48070868  T
Q  286 ----aacataaaatattttttaattcattcactttctctcatcttcatct 331  Q
        ||||||||||| || |||||||||||||||||| ||||| ||||||    
T  48070869 gtccaacataaaatacttcttaattcattcactttctttcatcctcatct 48070918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 27227089 - 27227036
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaa 96  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaa 27227036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 31136158 - 31136357
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    ||||||||||| ||||||| || ||||| |||| | | ||   ||||||||||||| |||||||||||| ||| |||||||  ||||     ||||||||    
T  31136158 taggggtgtaaatggttcggacgaaaccgatgacaccaaa---ccaaaccgaaaaagtatccgaccttgtttgattcggttcaaaac-----cgaaccaa 31136249  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
     | ||||| || || ||||||||||||| ||||||   ||||||||||||    |||||||||||| | |||||| ||| | ||||| | ||| || |||    
T  31136250 cctaaaccaatataatttggtttggttcttggtttcaaatttcgagatccaaagaaccgatgaaccgaaccgatgctaaactcactcatcattatagtaa 31136349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 287
Target Start/End: Complemental strand, 35738178 - 35738067
Alignment:
Q  174 gtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggtta 273  Q
    ||||||||||| |||||||  | ||||||| |||||| | |||  ||||| ||||||  ||||||||||||||||||  | ||||||  ||||||| |||    
T  35738178 gtttttcattttgagatccaaggaaccgatcaaccaaactgattgtaaccccactccccattttactaatattatccctcatcacac--acttatgatta 35738081  T
Q  274 tgcccaaaattaaa 287  Q
     |||||||||||||    
T  35738080 ggcccaaaattaaa 35738067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 287
Target Start/End: Complemental strand, 25545332 - 25545139
Alignment:
Q  94 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 193  Q
    ||||| ||| |||||||| |||||||||||  |||||||    |||||| | ||||||||||| |||||||||||||     |||| ||||  | ||||     
T  25545332 aaaaagtattcgaccttgattggttcggttcaaaaccgaactaaaccaacctaaaccgatctagtttggtttggttctcaacttttaattttaaaatcca 25545233  T
Q  194 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
       |||| ||||| | | || ||| ||||| ||||||  |||||| |||||||||||| ||||||| | ||||||| ||| || ||||||||||    
T  25545232 aagaaccaatgaatcgaaccaatgctaacctcactccccattttagtaatattatcctgcctcacatacacttatgattaagctcaaaattaaa 25545139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 86 - 333
Target Start/End: Complemental strand, 28319423 - 28319176
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||| | |||||||||| ||| |||| || ||||||||||||||||||||||||||||    
T  28319423 ccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttcatttc 28319324  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    ||||| |||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28319323 gagattcgtgaacctgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta 28319224  T
Q  286 aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||    
T  28319223 aacataaaatattttttaatcaattcactttctctcattttcatctca 28319176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 42 - 331
Target Start/End: Complemental strand, 23108098 - 23107789
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 131  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||          |||||||||||||||| |||||| ||||||||||||    
T  23108098 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccg 23107999  T
Q  132 attcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc----aatccgatgataaccacac 227  Q
    || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| ||    
T  23107998 atccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcaatccgatgataaccatac 23107899  T
Q  228 tccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||      ||||||||||| |||||||| ||||||||||||||     
T  23107898 tccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctcta 23107799  T
Q  322 atcttcatct 331  Q
    ||| ||||||    
T  23107798 atcatcatct 23107789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 86 - 326
Target Start/End: Complemental strand, 24466448 - 24466202
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    |||||| ||||||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||     
T  24466448 ccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcatttt 24466349  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  24466348 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaatta 24466249  T
Q  286 ------aacataaaatattttttaattcattcactttctctcatctt 326  Q
          ||||||||||| |||||||| ||||||||||||||||||||    
T  24466248 aagtccaacataaaatactttttaatccattcactttctctcatctt 24466202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 4413515 - 4413681
Alignment:
Q  94 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 193  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  4413515 aaaaaatatccgatcttgtttggttcggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccg 4413614  T
Q  194 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacac 260  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  4413615 tgaaaccgataaaccaatccgatgataatcacactccttattttactagtattatcctacctcacac 4413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 333
Target Start/End: Original strand, 42141257 - 42141545
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccg-aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 141  Q
    |||||| |||||||||| | |||||||| |||||| ||||| ||||||||| ||||||||| |||||||  |||||||||||  |||||||   |||| |    
T  42141257 taggggcgtaagtggttaggacaaaaccgatgaaaccgaaaatccaaaccgaaaaaaatattcgaccttctttggttcggttcaaaaccgaactgaacaa 42141356  T
Q  142 atcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacta 241  Q
    | | ||| ||||||| ||||||| ||||| |||||||| |||| |||||||   |||     ||||| | |||||| ||| | ||||||| |||||| ||    
T  42141357 acctaaatcgatctactttggttcggttcttggtttttaattttgagatcc---aaa-----gaaccgaaccgatgctaaactcactcctcattttagta 42141448  T
Q  242 atattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
    ||||||| |  ||||||||| ||||||| |||  | ||||||||      ||||||||||| |  |||| | ||||||||||||||||| ||||||||    
T  42141449 atattatacctcctcacacacacttatgattaatctcaaaattaaagtccaacataaaatactccttaa-tgattcactttctctcatcatcatctca 42141545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 8606265 - 8606106
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    ||||||||||||| ||||| || ||| |||| ||||||  ||||| | ||||||||||| ||||||||||   |||||| |||||   |||||||||||     
T  8606265 ccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatcgaaccaatctaaaccgatcttggttggttcggttctcagtttttcatttt 8606166  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatat 245  Q
    |||||||  | |||| ||||| | | |||||| ||||||||||||  |||||||||||||    
T  8606165 gagatccaaggaaccaatgaatcgaaccgatggtaaccacactccccattttactaatat 8606106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 53393337 - 53393087
Alignment:
Q  47 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccgattcg 136  Q
    ||||||||||||||| |||||||| |||||| ||||| |||||||||||          ||| |||||||||||| |||||||||||| |||| ||  ||    
T  53393337 ggtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccg 53393238  T
Q  137 aaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattt 236  Q
    |||||| | ||||||||||| ||||||| |||||  ||||| | | || || ||||    |||||||||||| | |||||| ||||| ||||    ||||    
T  53393237 aaccaacctaaaccgatctagtttggttcggttctcggtttataactttgaaatccaatgaaccgatgaaccgaaccgatgctaacctcactttccattt 53393138  T
Q  237 tactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
    || |||||||||||  | ||||||| |||| || ||| || ||||||||||    
T  53393137 tagtaatattatccctcttcacacacacttctgattaagctcaaaattaaa 53393087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 13207547 - 13207472
Alignment:
Q  48 gtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtt 123  Q
    ||||||| |||||| |||||||| |||||||||||| |||||||||||||| |||| || |||| |||||||||||    
T  13207547 gtgtaagcggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaaaagtatctgatcttgtttggttcggtt 13207472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 8056816 - 8056939
Alignment:
Q  137 aaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattt 236  Q
    |||||||| ||||||| ||  ||||||| ||||| | | ||||||||| |||||||  |||||||||||||  | |||||  ||||| ||||||  ||||    
T  8056816 aaccaatctaaaccgaacttgtttggttcggttc-tcgattttcattttgagatccaagaaaccgatgaactgaaccgatcctaaccccactccccattt 8056914  T
Q  237 tactaatattatcctacctcacaca 261  Q
    ||||||||||||||| |||||||||    
T  8056915 tactaatattatccttcctcacaca 8056939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 19682091 - 19682001
Alignment:
Q  197 aaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
    |||||||||||||| |||||| ||||| |||| || |||||| |||||||||||   |||||| | ||||| | ||| || ||||||||||    
T  19682091 aaccgatgaaccaaaccgatgctaacctcacttctcattttagtaatattatcccttctcacatacacttacgattaagctcaaaattaaa 19682001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 39839153 - 39839104
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaacc 92  Q
    ||||||||||||||||||| || ||||| |||||| ||||| ||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaacc 39839104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 86 - 326
Target Start/End: Complemental strand, 713 - 467
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    |||||| ||||||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||     
T  713 ccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcatttt 614  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  613 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaatta 514  T
Q  286 ------aacataaaatattttttaattcattcactttctctcatctt 326  Q
          ||||||||||| |||||||| ||||||||||||||||||||    
T  513 aagtccaacataaaatactttttaatccattcactttctctcatctt 467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 86 - 305
Target Start/End: Original strand, 19947761 - 19947980
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||| | ||||||||||| | |||||| |||| |||||||||||||||||||||||    
T  19947761 ccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttcatttc 19947860  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 285  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19947861 aagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta 19947960  T
Q  286 aacataaaatattttttaat 305  Q
    ||||||| ||| ||||||||    
T  19947961 aacataagatactttttaat 19947980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 92 - 283
Target Start/End: Complemental strand, 16746548 - 16746357
Alignment:
Q  92 cgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatc 191  Q
    ||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatc 16746449  T
Q  192 cgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaat 283  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16746448 cgtgaaatcgatgaaccaatccgatgataacctcactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaat 16746357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 43 - 325
Target Start/End: Original strand, 31895896 - 31896181
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa----------accgaaaaaatatccgaccttgcttggttcggtttgaaaccga 132  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||          |||||||||||||||||||||| ||||||||||||||||||||    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  133 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 232  Q
    |  ||||||||| ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||             |||||||||||||||||||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaa-------------ccgatgataaccacactcctt 31896082  T
Q  233 attttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatct 325  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||| |||| |||||||||||||||||||    
T  31896083 attttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaagtccaacataaaatattttataatccattcactttctctcatct 31896181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 16746726 - 16746550
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccga 132  Q
    ||||| ||||||||||||| |||||||||| |||| |||||||| ||||||||          ||||||||| |||||| ||||||||||||||||||||    
T  16746726 tagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16746627  T
Q  133 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacca 209  Q
    | | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  16746626 tccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 284
Target Start/End: Complemental strand, 1498326 - 1498129
Alignment:
Q  87 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcg 186  Q
    ||||| || |||||||||||||||| |||||||||||  |||||||   ||||||| | |||||||| || ||  |||||||||   || ||| |||| |    
T  1498326 caaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaaaccgatgtagttaagtttggttctcagtattttattttg 1498227  T
Q  187 agatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatt 284  Q
    ||||||   ||||||||||||| | |||||| ||||   |||||  |||||| |||||||||||   ||| |||| ||||||| ||| || |||||||    
T  1498226 agatccaataaaccgatgaaccgaaccgatgctaacatgactccccattttagtaatattatcccttctcgcacacacttatgattaagctcaaaatt 1498129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 41092163 - 41092105
Alignment:
Q  53 agtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttg 111  Q
    ||||||||| ||||||||||||||| |||||||| |||| |||||  |||| |||||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaactgaaaaggtatctgaccttg 41092105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 46655576 - 46655768
Alignment:
Q  94 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 193  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  46655576 aaaaaatatccgaccttacttggttcggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccg 46655675  T
Q  194 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaa 286  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  46655676 tgaaaccgatgaaccaatccaatgataaccacacttcttattttactaatattatcctacctcacacaaatttatggttaggcccaaaattaa 46655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 333
Target Start/End: Original strand, 44471020 - 44471323
Alignment:
Q  46 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa----------accgaaaaaatatccgaccttgcttggttcggtttgaaaccgattc 135  Q
    |||||||||||||||| |||||||| |||||||||||| |||||          ||||||||  |||||||||||| || ||||||||  |||||||  |    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  136 gaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatt 235  Q
     |||||||| ||||||||||| ||||||| ||||| |||||||| |||| || ||||    |||||||||||| | |||||| ||||   |||||  | |    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggtttttaattttgaaatccaaagaaccgatgaaccgaaccgatgctaacataactccccagt 44471219  T
Q  236 ttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcat 329  Q
    ||| |||||||||||  ||||| ||| ||||||| ||| || ||||||||      ||||||||||| |   |||||||||||||||||| |||  ||||    
T  44471220 ttagtaatattatccctcctcaaacacacttatgattaagctcaaaattaaaggctaacataaaatactccataattcattcactttctcccattatcat 44471319  T
Q  330 ctca 333  Q
    ||||    
T  44471320 ctca 44471323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 11503459 - 11503284
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    ||||||| ||||  ||||||||||||  ||||  ||||  |||||||  |||||||||||||||||||||  |||||||||||||  | ||||||||||     
T  11503459 ccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccgaaccgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcatttt 11503360  T
Q  186 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacaca 261  Q
    |||||||  ||||||||| |||| | || ||| ||||| ||||||  ||||||||| ||||||||  |||||||||    
T  11503359 gagatccaagaaaccgataaaccgaacccatgctaacctcactccccattttactattattatccctcctcacaca 11503284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 30554670 - 30554588
Alignment:
Q  88 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 170  Q
    ||||||||||| |||||||||||| || ||||||||  ||| |||  |||||||||| ||||||||||| ||||||| |||||    
T  30554670 aaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcgaaccgaaccaatctaaaccgatctagtttggttcggttc 30554588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 330
Target Start/End: Complemental strand, 44682129 - 44681881
Alignment:
Q  88 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg-aaaccgatctattttggtttggttcatggtttttcatttcg 186  Q
    ||||||||||| ||| |||||||| ||||||||| |  |||||||   ||||||| |  ||||||||||| ||||||||||||| |||||||| |||| |    
T  44682129 aaaccgaaaaagtatacgaccttgtttggttcggatcaaaaccgaactgaaccaaacctaaaccgatctagtttggtttggttcttggtttttaattttg 44682030  T
Q  187 agatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta- 285  Q
    | |||||   ||||||  |||| | |||||| ||||| |||| |  | || | |||||||||||   |||||||| ||||||| ||| || ||||||||     
T  44682029 aaatccgatgaaccgacaaaccgaaccgatgctaacctcacttccca-ttgagtaatattatccgttctcacacacacttatgattaagctcaaaattaa 44681931  T
Q  286 -----aacataaaatattttttaattcattcactttctctcatcttcatc 330  Q
         ||||||||||| |  |||||||||| |||||||| |||| |||||    
T  44681930 agtccaacataaaatactccttaattcatttactttctcccatcatcatc 44681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 46892657 - 46892703
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 132  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  46892657 ccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaaccga 46892703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 779629 - 779533
Alignment:
Q  88 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcattt 184  Q
    ||||||||||| ||||| |||||| || ||||||||  |||| || ||||||||| | ||||| ||||| ||||||| ||||| |||||||| ||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttttaattt 779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 333
Target Start/End: Original strand, 26757593 - 26757901
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaacc----------gaaaaaatatccgaccttgcttggttcggtttgaaaccga 132  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||| |          |||||| ||| |||| ||| ||||||  |||| |||| ||    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaatcaaacaaaatcgaaaaagtattcgacgttgtttggtttagtttaaaactga 26757692  T
Q  133 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 232  Q
      |||||||| | ||| |||| ||  |||||| ||||| ||| |||| |||| |||||||    || |||| |||  | |||||  ||||| |||||       
T  26757693 accgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatccaaagaatcgataaactgaaccgatagtaacctcactctcc 26757792  T
Q  233 attttactaatattatcctacctcacacaaac--ttatggttatgcccaaaattaaa------cataaaatattttttaattcattcactttctctcatc 324  Q
    |||||| |||||||||||| || |||||| ||  ||||| ||| || ||||||||||      ||||||||| |  ||||||||||||||||||||||||    
T  26757793 attttagtaatattatccttccacacacacacacttatgattaagctcaaaattaaagttcaacataaaatactccttaattcattcactttctctcatc 26757892  T
Q  325 ttcatctca 333  Q
     ||||||||    
T  26757893 atcatctca 26757901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 46892755 - 46892884
Alignment:
Q  202 atgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaat 295  Q
    ||||||||| |||||| ||||| ||||||| |||||| |||||||||||  | ||||||| ||||| | ||   | ||||||||      ||||||||||    
T  46892755 atgaaccaaaccgatgctaacctcactcctcattttagtaatattatccctcatcacacacacttacgattgatctcaaaattaaagttcaacataaaat 46892854  T
Q  296 attttttaattcattcactttctctcatct 325  Q
    | |  |||||||||||||||||||||||||    
T  46892855 actccttaattcattcactttctctcatct 46892884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 333
Target Start/End: Original strand, 28550497 - 28550749
Alignment:
Q  87 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcg 186  Q
    |||||||||||| ||||  || ||| |||||||||||  || ||||  ||||||||   |||| |||||| ||||||| | |||  ||||||| |||| |    
T  28550497 caaaccgaaaaagtatctaactttgtttggttcggttcaaatccgaaccgaaccaacttaaacggatctagtttggttcgattctcggtttttaattttg 28550596  T
Q  187 agatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta- 285  Q
    |||||     |||||||||||| |  ||||| ||||| |||||| ||||||   |||||||||   ||||||||| ||||||| |||  | ||||||||     
T  28550597 agatctaaagaaccgatgaaccgaatcgatgttaacctcactccctattttggcaatattatctctcctcacacacacttatgattaaactcaaaattaa 28550696  T
Q  286 -----aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
         ||| ||||||| || | ||||||||||||||||| |||| ||||||||    
T  28550697 agtccaacgtaaaatacttctcaattcattcactttctcccatcatcatctca 28550749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 250
Target Start/End: Original strand, 22240516 - 22240724
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 141  Q
    |||| |||||||| | ||||  ||||||| |||||||||||||  |||||||||||| ||||||||| ||  ||||| ||||   || |||  |||||||    
T  22240516 gtagtggtgtaagcgattcggtcaaaaccgatgaaatcgaaaggtcaaaccgaaaaagtatccgaccatgtctggttaggttcataatcgaaccgaacca 22240615  T
Q  142 atcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacta 241  Q
    | | ||| ||| ||   | |||| | |||  |||||| ||||| |||||||  | ||||||| |||||| |||||||||| | |||||  |||||| |||    
T  22240616 aactaaatcgaccttgctgggttcgattctcggttttacattttgagatccaaggaaccgataaaccaaaccgatgataatctcactctctatttttcta 22240715  T
Q  242 atattatcc 250  Q
    ||| |||||    
T  22240716 atactatcc 22240724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 44285615 - 44285691
Alignment:
Q  88 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtt 164  Q
    |||||||||||||||  ||||||| |||||||||||  |||||||  |||||||| | ||| |||| || |||||||    
T  44285615 aaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 47831317 - 47831242
Alignment:
Q  175 tttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcct 251  Q
    ||||| |||| |||||||   ||||| ||||||||| |||||| ||||| ||||||  |||||||||||||||||||    
T  47831317 ttttttattttgagatccaaaaaacctatgaaccaaaccgatgttaacc-cactcccaattttactaatattatcct 47831242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 50 - 331
Target Start/End: Complemental strand, 2013 - 1729
Alignment:
Q  50 gtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaac 149  Q
    |||||||||||| |||||| ||| |||| | ||||| ||||  ||||||||||||||||||| |||||||||||||||| ||||  ||||||||| ||||    
T  2013 gtaagtggttcggacaaaatcaacgaaaccaaaagttcaaattgaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaac 1914  T
Q  150 cgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatc 249  Q
     |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  1913 tgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaaccaatccgatgataacaacactccttattttactaatattatt 1814  T
Q  250 ctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatct 331  Q
    ||||||  |||||||||||||||| |   |||||||      ||||||||||| |||||||| |||||||||||||||||| ||||||    
T  1813 ctacct--cacaaacttatggtta-ggttaaaattaaaatccaacataaaatactttttaatccattcactttctctcatcatcatct 1729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 287
Target Start/End: Original strand, 13756 - 14000
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 142  Q
    |||||||||||| |||||| |||||| ||||||||   ||||||||||||| |||  ||| ||||||||  |||||| |||  ||| |||  ||||||||    
T  13756 taggggtgtaagcggttcggacaaaatcaatgaaactaaaagtccaaaccggaaatgtattcgaccttgtctggttcagttcaaaatcgaaccgaaccaa 13855  T
Q  143 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 242  Q
    || |||| |||||  ||||||||||||   |||||||||||| |||||||   ||||||||||| | | |||||| ||||| ||||||  |||||||||     
T  13856 tctaaactgatcttatttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaaccgatgctaacctcactccccattttactat 13955  T
Q  243 tattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
    |||||| |  | ||||||| |||||||  ||||||||||||||||    
T  13956 tattatacctcttcacacacacttatgagtatgcccaaaattaaa 14000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 33729 - 33776
Alignment:
Q  43 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa 90  Q
    ||||||||||||||||||| | |||||||||||||  |||||||||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaa 33776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 287
Target Start/End: Original strand, 11846307 - 11846494
Alignment:
Q  100 tatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaac 199  Q
    |||||||||||| |||||| ||||  |||||||   |||||||   ||||||||||| ||||||| |||||  ||||||| |||| |||||||    |||    
T  11846307 tatccgaccttgtttggtttggttcaaaaccgaactgaaccaacttaaaccgatctagtttggttcggttctcggtttttaattttgagatccaatgaac 11846406  T
Q  200 cgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 287  Q
    | |||||||||   |||| || || ||||||  |||||| |||||||||||  ||||||||| ||||||| ||| || ||||||||||    
T  11846407 caatgaaccaaattgatgctatcctcactccccattttagtaatattatccctcctcacacacacttatgattaagctcaaaattaaa 11846494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 333
Target Start/End: Original strand, 9826817 - 9827043
Alignment:
Q  113 ttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 212  Q
    |||||||||||  |||||||  ||||||||   ||||||||||| ||||||| | |||  ||||||| |||| || ||||    |||||||||||||| |    
T  9826817 ttggttcggttgaaaaccgaaccgaaccaacataaaccgatctagtttggttcgattctcggtttttaattttgaaatccaaagaaccgatgaaccaaac 9826916  T
Q  213 cgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaatt 306  Q
     |||| ||||| |||| |   ||||| |||||||||||  |||||||||  |||||| ||| || ||| ||||      ||||||||||| |  ||||||    
T  9826917 tgatgttaacctcacttcccgttttagtaatattatccctcctcacacacgcttatgattaagctcaatattaaagtccaacataaaatactccttaatt 9827016  T
Q  307 cattcactttctctcatcttcatctca 333  Q
    ||||||||||||| |||| ||||||||    
T  9827017 cattcactttctcccatcatcatctca 9827043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 1208739 - 1208864
Alignment:
Q  214 gatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa------cataaaatattttttaattc 307  Q
    |||| ||||| |||||||| |||||||||| ||||||  | ||||||| ||||||  ||| |||||||||||||      ||||||||| |  |||||||    
T  1208739 gatgctaaccccactccttgttttactaatgttatccctcttcacacacacttatcattaggcccaaaattaaagttcagcataaaatactacttaattc 1208838  T
Q  308 attcactttctctcatcttcatctca 333  Q
    |||||||||| |||||| ||||||||    
T  1208839 attcactttccctcatcatcatctca 1208864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 5416284 - 5416331
Alignment:
Q  286 aacataaaatattttttaattcattcactttctctcatcttcatctca 333  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  5416284 aacataaaatagtctttaattcattcactttctctcatcatcatctca 5416331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 23301464 - 23301570
Alignment:
Q  86 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 185  Q
    |||||||||||||  || |||||||| |||||||||||  |||||||  |||||||| | |||| |||||| ||||||| |||||   |||||| ||||     
T  23301464 ccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttggttcggttctcagtttttaatttt 23301563  T
Q  186 gagatcc 192  Q
    |||||||    
T  23301564 gagatcc 23301570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 23585862 - 23585990
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 141  Q
    |||||||||||||| ||| | |||||||| ||||||  |||| || |||  |||||| |||||||||||| || ||||||||  |||||||  | ||| |    
T  23585862 gtaggggtgtaagtagtttggacaaaaccgatgaaactgaaaatctaaatagaaaaagtatccgaccttgttttgttcggttcaaaaccgaaccaaacta 23585961  T
Q  142 atcgaaaccgatctattttggtttggttc 170  Q
    |   |||||||| || |||||||||||||    
T  23585962 acgtaaaccgatatagtttggtttggttc 23585990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 2454036 - 2453993
Alignment:
Q  286 aacataaaatattttttaattcattcactttctctcatcttcat 329  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||    
T  2454036 aacataaaatatttcttaattcattcactttctcccatcatcat 2453993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 26186634 - 26186588
Alignment:
Q  285 aaacataaaatattttttaattcattcactttctctcatcttcatct 331  Q
    |||| ||||||| | ||||||||||||||||||||||||| ||||||    
T  26186634 aaacttaaaatactctttaattcattcactttctctcatcatcatct 26186588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 344518 - 344452
Alignment:
Q  42 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgacc 108  Q
    |||||||||||||||||||| ||||||   |||||| ||||| |||||||| ||||| ||| |||||    
T  344518 gtaggggtgtaagtggttcggacaaaagtgatgaaaccgaaaatccaaaccaaaaaagtattcgacc 344452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 6366 - 6472
Alignment:
Q  88 aaaccgaaaaaatatccgaccttgct----tggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatt 183  Q
    ||||||||||| |||||||||| |||    ||||||||||| |||  || ||||||||| | ||||||||||| |||| | ||||||  ||||||| |||    
T  6366 aaaccgaaaaagtatccgacctagctagtttggttcggtttaaaattgaatcgaaccaacctaaaccgatctagtttgatctggttctcggtttttaatt 6465  T
Q  184 tcgagat 190  Q
    | |||||    
T  6466 ttgagat 6472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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