View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4148_high_2 (Length: 726)
Name: NF4148_high_2
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 360 - 710
Target Start/End: Complemental strand, 12888660 - 12888306
Alignment:
| Q |
360 |
ttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcattattattat |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12888660 |
ttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcattattattat |
12888561 |
T |
|
| Q |
460 |
tcaccttctttctttccannnnnnnnn--atcatttagtcaataatctttttaataaggaaaaataattgaatgaataaaagagggtttataaagggtaa |
557 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12888560 |
tcaccttctttctttccatttttttttttatcatttagtcaataatctttttaataaggaaaaataattgaatgaataaaagagggtttataaagggtaa |
12888461 |
T |
|
| Q |
558 |
acatgaagatgtttaagggtttatattgtttggttgttaggaatcaatttttggtatgtcaatgccaatatttctctatgtttattgttac--cacataa |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
12888460 |
acatgaagatgtttaagggtttatattgtttggttgttaggaatcaatttttggtatgtcaatgccaatatttctctatgtttattgtttccacacataa |
12888361 |
T |
|
| Q |
656 |
atatgtatttgttctagacttcaaatgtggataaataatgtctcagcacaatttg |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12888360 |
atatgtatttgttctagacttcaaatgtggatagataatgtctcagcacaatttg |
12888306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 12889012 - 12888783
Alignment:
| Q |
11 |
cacagacacacagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctggattggacaggctttt |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12889012 |
cacagatacacagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctggattggacaggct-tt |
12888914 |
T |
|
| Q |
111 |
ttctgcattttcgtattttctacacgtcacatgatgcctagaaagacttgtcaaactcaaatctaata---tttggtttggtgtac-ttctattttaact |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
12888913 |
ttctgcattttcgtattttctacatgtcacatgatgcctagaaagacttgtcaaactcaaatctaatatcttttggtttggtgtactttctattctaact |
12888814 |
T |
|
| Q |
207 |
tcttcaagttcgaccacagaagcaaagctaa |
237 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |
|
|
| T |
12888813 |
tcttcaagttctaccacataagcaaagctaa |
12888783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 365 - 451
Target Start/End: Complemental strand, 12904868 - 12904782
Alignment:
| Q |
365 |
tatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt |
451 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12904868 |
tatggacgtgggagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt |
12904782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 583 - 645
Target Start/End: Complemental strand, 12895442 - 12895380
Alignment:
| Q |
583 |
ttgtttggttgttaggaatcaatttttggtatgtcaatgccaatatttctctatgtttattgt |
645 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12895442 |
ttgtttggttgttaggactaaatttttggtatgtcaatgccaatatttctctatgtttattgt |
12895380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 12891352 - 12891277
Alignment:
| Q |
21 |
cagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctgga |
96 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
12891352 |
cagttatgcttgttaaggcaataacttgtattaaaaccggttcattcaagggatcctttcaaaataaagagctgga |
12891277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 359 - 450
Target Start/End: Original strand, 12876531 - 12876622
Alignment:
| Q |
359 |
gttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcat |
450 |
Q |
| |
|
||||||||||| ||||||||||| ||| | ||||||||||| || | |||| |||||| |||| ||||||||||||| || || |||||||| |
|
|
| T |
12876531 |
gttcactatggccgtggaagtgatgctaagggaatgcatttctaccgaactattcaacttcgtgagttgcaagatcaagagctagtaagcat |
12876622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 571
Target Start/End: Complemental strand, 12895561 - 12895503
Alignment:
| Q |
513 |
aaggaaaaataattgaatgaataaaagagggtttataaagggtaaacatgaagatgttt |
571 |
Q |
| |
|
||||||||||||| |||||||||||| || | |||||||||||||||||||| |||||| |
|
|
| T |
12895561 |
aaggaaaaataatagaatgaataaaatagagcttataaagggtaaacatgaatatgttt |
12895503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 451
Target Start/End: Complemental strand, 12924965 - 12924903
Alignment:
| Q |
389 |
ggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt |
451 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||||||| |||| |||||||||||| |
|
|
| T |
12924965 |
ggaatgcatttttatctaaccattcaacttcgtgagttgcaagatgatgaacttgtaagcatt |
12924903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 571
Target Start/End: Complemental strand, 12895847 - 12895803
Alignment:
| Q |
529 |
atgaataaaagagggtttataaagggtaa--acatgaagatgttt |
571 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12895847 |
atgaataaaagagggtttataaagggtaattacatgaagatgttt |
12895803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 12929873 - 12929833
Alignment:
| Q |
366 |
atgggcgtggaagtgaagctcatggaatgcatttttatcta |
406 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
12929873 |
atgggcgtggcagtgaagatcatggaatgcatttttatcta |
12929833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 358 - 449
Target Start/End: Original strand, 21113932 - 21114023
Alignment:
| Q |
358 |
tgttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagca |
449 |
Q |
| |
|
||||||| |||||||||| ||||||||| | ||||||||||| ||||||||| ||||| || ||| |||| ||||| ||||||||||||| |
|
|
| T |
21113932 |
tgttcacaatgggcgtgggagtgaagctaagggaatgcatttctatctaactattcaatttctccagatgcatgatcaagaccttgtaagca |
21114023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University