View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_high_23 (Length: 248)
Name: NF4148_high_23
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37160691 - 37160461
Alignment:
| Q |
1 |
tcaaagtgtgttgtgggatcatagctctacaaggatttaattttaggttagtcaaagagaaaaatgaggtaaacaatttcattatacattgttgtaagag |
100 |
Q |
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| T |
37160691 |
tcaaagtgtgttgtgggatcatagctctacaaggatttaattttaggttagtcaaagagaaaaataaggtaaacaatttcattatacattgttgtcggag |
37160592 |
T |
|
| Q |
101 |
attcttcttaatacttactgtggagatgaaacaaccatcagtagcatgatcattggtgggttcaaatctgtcatagatgtcatagaatatctcatcgact |
200 |
Q |
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| T |
37160591 |
attcttcttaatacttactgtggagatgaaacaaccatcggtagcatgatcattggtaggttcaaatctgtcatagatgtcatagaatatctcatcgact |
37160492 |
T |
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| Q |
201 |
ggtccaaggagatcgattccaggcttcagtt |
231 |
Q |
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| T |
37160491 |
ggtccaaggagatcgattccaggcttcagtt |
37160461 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 37501820 - 37501874
Alignment:
| Q |
123 |
gagatgaaacaaccatcagtagcatgatcattggtgggttcaaatctgtcataga |
177 |
Q |
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| T |
37501820 |
gagatgaaacaaccatcagtagcatgatgataggtgggttctaatatgtgataga |
37501874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 8409518 - 8409464
Alignment:
| Q |
123 |
gagatgaaacaaccatcagtagcatgatcattggtgggttcaaatctgtcataga |
177 |
Q |
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| T |
8409518 |
gagatgaaacaaccatcagtagcatgatgataggtgggttctaatatgtgataga |
8409464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 21260889 - 21260957
Alignment:
| Q |
109 |
taatacttactgtggagatgaaacaaccatcagtagcatgatcattggtgggttcaaatctgtcataga |
177 |
Q |
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||||| ||| ||| |||||||||||||||| ||||||||||| || ||||||||| ||| ||| ||||| |
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| T |
21260889 |
taataattattgtagagatgaaacaaccattagtagcatgatgataggtgggttcgaatatgtgataga |
21260957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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