View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_high_24 (Length: 246)
Name: NF4148_high_24
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 7956557 - 7956717
Alignment:
| Q |
8 |
ataaaattaatcattcaagttataaaactttctttcatgtttgtactaagtacgtactaactttcaatttggagtacgtagttaaatatattattagagt |
107 |
Q |
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| T |
7956557 |
ataaaattaatcattcaagtgataaaactttctttcatgtttgtactaagtacgtactaactttcaatttggagtatgtagttaa--atattattagagt |
7956654 |
T |
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| Q |
108 |
agttaaacatgaaaatatacccaattattagagtagttaaatgtgaaaatatacccaattatt |
170 |
Q |
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| T |
7956655 |
agttaaacatgaaaatatacccaattattagagtagttaaatgtgaaaatatacccaattatt |
7956717 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 7956644 - 7956684
Alignment:
| Q |
131 |
attattagagtagttaaatgtgaaaatatacccaattatta |
171 |
Q |
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| T |
7956644 |
attattagagtagttaaacatgaaaatatacccaattatta |
7956684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 34148499 - 34148541
Alignment:
| Q |
93 |
atatattattagagtagttaaacatgaaaatatacccaattat |
135 |
Q |
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| T |
34148499 |
atatattttcagagtagttaaacatgaaaatatacccaattat |
34148541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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