View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_high_30 (Length: 226)
Name: NF4148_high_30
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 3362081 - 3362271
Alignment:
| Q |
19 |
cagagaacaaaaaggaata----aataaataaataatgtgatcaatggagaaagtacaagtgaaaccaaaccaacatcttgttcttgttcttcttcaatg |
114 |
Q |
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| T |
3362081 |
cagagaacaaaaaggaataaataaataaataaataatgtgatcaatggagaaagtacaagtgaaaccaaaccaacatcttgttcttgttcttcttcaatg |
3362180 |
T |
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| Q |
115 |
acattactgcttccaattccaaaaaccacaaatgcattcaatgactcacacaaacaacaattaaaatagtgcataccaacaccacttgtat |
205 |
Q |
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| T |
3362181 |
agattactgcttccaattccaaaaaccacaaatgcattcaatgattcacacaaacaacaattaaaatagtgcataccaacaccacttgtat |
3362271 |
T |
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