View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_high_7 (Length: 437)
Name: NF4148_high_7
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_high_7 |
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| [»] scaffold0927 (2 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: scaffold0927 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 82 - 431
Target Start/End: Complemental strand, 1570 - 1223
Alignment:
| Q |
82 |
tctaagcacacagctcctggtgtttaaataaaccaaacctgttaataactttaacttcatgaatgaatcattttcctgaaaaacataaagaaataactaa |
181 |
Q |
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| T |
1570 |
tctaagcacacagctcctggtgtttaaataaaccaaacttgttaataactttaacttcatgaatgaatcattttcctgaaaaacataaagaaataactaa |
1471 |
T |
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| Q |
182 |
tcatcataaattcatattaccacgcttgccaaccacatatcctagaatgtttagatttcatattctaatataggagcaaacatcctagaagagctaggtt |
281 |
Q |
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| T |
1470 |
tcatcataaattcatattaccacgcttgccaaccacatatcctagaatgtttagatttcatattctaatataggagcaaacatcctagaagagctaggtt |
1371 |
T |
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| Q |
282 |
tcaagcatagatattgttgtaaactcaaaaataattatagaatgaaaaataatattctgagatgaaattttatgctttgttgattattttttgaacatgc |
381 |
Q |
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| T |
1370 |
tcaagcatagatattgttgtaaactcaaaaatgattatagaatgaaaaataatattcttagatgaaattttatgctttgttgattattttttgaacatgc |
1271 |
T |
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| Q |
382 |
atgctttgttgattttattagaactaagaggtatatttttcctatgcttc |
431 |
Q |
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| T |
1270 |
atgctttgttgattttattagaa--aagaggtatatttttcctgtgcttc |
1223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 2644 - 2577
Alignment:
| Q |
18 |
tttgctgggtcatgaaatgttgccacagagagcttgctagctctctatcaggattagtaactgctcta |
85 |
Q |
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| T |
2644 |
tttgctgggtcatgaaatgttgccacagagagcttgctagctctctatcaggattagtaattgctcta |
2577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 28589624 - 28589698
Alignment:
| Q |
21 |
gctgggtcatgaaatgttgccacagagagcttgctagctctctatcaggattagtaactgctctaagcacacagctcctg |
100 |
Q |
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| T |
28589624 |
gctgggtcatgaaatgttgccacagagagc---cttgctct--atcaggattagtaactgctctatgcacacagctcctg |
28589698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 28564707 - 28564797
Alignment:
| Q |
244 |
ttctaatataggagcaaacatcctagaagagctaggtttcaagcatagatattgttgtaaactcaaaaataattatagaatgaaaaataata |
335 |
Q |
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| T |
28564707 |
ttctaatacatgagcaaacatcctataaaagcttggtttcatgaatagatactgttgtaaactcaaaaa-cattatagaatgatagataata |
28564797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 28577147 - 28577200
Alignment:
| Q |
315 |
attatagaatgaaaaataatattctgagatgaaa-ttttatgctttgttgatta |
367 |
Q |
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| T |
28577147 |
attatagaatgaaaaatgatattctgagacgaaacttttatgctttgttgatta |
28577200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 28578832 - 28578916
Alignment:
| Q |
263 |
atcctagaagagctaggtttcaagcatagatattgttgtaaactcaaaaataattatagaatgaaaaataatattctgagatgaaa |
348 |
Q |
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| T |
28578832 |
atcctataaaagcttggtttcatgtatggatattgttgtaaactcaaaaatcactat-gaatgaaagataatattttgatatgaaa |
28578916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 28564485 - 28564520
Alignment:
| Q |
60 |
ctctatcaggattagtaactgctctaagcacacagc |
95 |
Q |
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| T |
28564485 |
ctctatcaggattagtaactgctctatgcacacagc |
28564520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 1015 - 949
Alignment:
| Q |
292 |
atattgttgtaaactcaaaaataattatagaatgaaaaataatattctgagatgaaa-ttttatgcttt |
359 |
Q |
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| T |
1015 |
atattgttgtaaactcaaa--tcattatagaatgaaatataatattttgaaatgaaacttttatgcttt |
949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 1015 - 949
Alignment:
| Q |
292 |
atattgttgtaaactcaaaaataattatagaatgaaaaataatattctgagatgaaa-ttttatgcttt |
359 |
Q |
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| T |
1015 |
atattgttgtaaactcaaa--tcattatagaatgaaatataatattttgaaatgaaacttttatgcttt |
949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 28961173 - 28961133
Alignment:
| Q |
288 |
atagatattgttgtaaactcaaaaataattatagaatgaaa |
328 |
Q |
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| T |
28961173 |
atagatactgttgtaaactcaaaaatcatcatagaatgaaa |
28961133 |
T |
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