View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_low_10 (Length: 396)
Name: NF4148_low_10
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 32167363 - 32167725
Alignment:
| Q |
11 |
cacagatattaaataacaataacatatggtcttcagcatactctcaaggatatgttgttttcttgaaataacaataactaagatatcattcatgttatct |
110 |
Q |
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| T |
32167363 |
cacagatattaaataacaataacatatggtcttcagcatactctcaaggatatgttgttttcttgaaataacaataactaagatatcattcatgttatct |
32167462 |
T |
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| Q |
111 |
atacaaagtaactaccaattttggtgggactttgcttatacatgtttactattaacagcacnnnnnnncttcaaatcttacggctaccataaccactaat |
210 |
Q |
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| T |
32167463 |
atacaaagtaactaccaattttggtgggactttgcttatacaagtttactattaacagcactttttttcttcaaatcttacggctaccataaccactaat |
32167562 |
T |
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| Q |
211 |
taatatctgcttgcttatcaaacaataaataaatgtggaatagagaagaggaattacaagtaaattatctccatttgttgtcctctttatatcaataatg |
310 |
Q |
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| T |
32167563 |
taatatc----tgcttatcaaacaataaataaatgtggaatagagaagaggaattacaagtaaattatctccatttgttgtcctctttatatcaataatg |
32167658 |
T |
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| Q |
311 |
gaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattgaattctgcaatagggtcag |
377 |
Q |
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| T |
32167659 |
gaagcaccattcaatgctccagaaatgagtgaagtgtcattagaattgaattctgcaatagggtcag |
32167725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 32164765 - 32164845
Alignment:
| Q |
294 |
tctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattgaattctgcaatagggt |
374 |
Q |
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| T |
32164765 |
tctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcagaattgaattctgcaacagggt |
32164845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 27359465 - 27359379
Alignment:
| Q |
289 |
tgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattgaattctgcaatagggtc |
375 |
Q |
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| T |
27359465 |
tgtcctctttatatcaattatagaagcaccacccaatgcttcagaaatgagtgaagtatcatcaaaattgagttcagtaatagggtc |
27359379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 27348471 - 27348539
Alignment:
| Q |
259 |
aggaattacaagtaaattatctccatttgttgtcctctttatatcaataatggaagcaccattcaatgc |
327 |
Q |
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| T |
27348471 |
aggaattacaagtaaatcatctgcaaattctgtcctcttcatatcaataatggaagcaccattcaatgc |
27348539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 27265171 - 27265239
Alignment:
| Q |
259 |
aggaattacaagtaaattatctccatttgttgtcctctttatatcaataatggaagcaccattcaatgc |
327 |
Q |
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| T |
27265171 |
aggaattacaagtaaatcatctgcaaattctgttctcttcatatcaataatggaagcaccattcaatgc |
27265239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 27321843 - 27321911
Alignment:
| Q |
259 |
aggaattacaagtaaattatctccatttgttgtcctctttatatcaataatggaagcaccattcaatgc |
327 |
Q |
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| T |
27321843 |
aggaattacaagtaaatcatctgcaaattctgttctcttcatatcaataatggaagcaccattcaatgc |
27321911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 377
Target Start/End: Original strand, 32156985 - 32157103
Alignment:
| Q |
259 |
aggaattacaagtaaattatctccatttgttgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcatcagaattg |
358 |
Q |
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| T |
32156985 |
aggaattacaagtaagtcatcttgaatttgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgagccaagtgtcgtcgaatttg |
32157084 |
T |
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| Q |
359 |
aattctgcaatagggtcag |
377 |
Q |
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| T |
32157085 |
aactctgtgatagggtcag |
32157103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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