View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4148_low_11 (Length: 380)
Name: NF4148_low_11
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 42230164 - 42229816
Alignment:
| Q |
17 |
acataacatgtacaatagtcggatacctgattccaagcagaattgttaaatatgtcttctgcaagcagttcactacaataattgagttcatcttcccatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42230164 |
acataacatgtacaatagtcggatacctgattccaagcagaattgttaaatatgtcttctgcaagcagttcactacaataattgagttcatcttcccatc |
42230065 |
T |
|
| Q |
117 |
ctcctagggtttgaagaacccactgtccgtccatacnnnnnnngaagcaaaattttattgagtcatgataataatatgaacaggcaacaccatctgaaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42230064 |
ctcctagggtttgaagaacccactgtccgtccatgcaaaaaaagaagcaaaattttattgagtcatgataataatatgaacaggcaacaccatctgaaaa |
42229965 |
T |
|
| Q |
217 |
ttagattcgtggaaaagatgggagaaacaaacctgcctatgagaccatgcatgataatgtttggcgtcaatagacaatgtcttcttggtgaactcaagtt |
316 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42229964 |
ttagattcgtggaaaagataggagaaacaaacctgcctatgagaccatgcatgataatgtttggcgtcaatagacaatatcttcttggtgaactcaagtt |
42229865 |
T |
|
| Q |
317 |
cactgtttctagcttcaagtcctaatttctcagcaacccatcgcctatg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42229864 |
cactgtttctagcttcaagtcctaatttctcagcaacccatcgcctatg |
42229816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University