View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_low_14 (Length: 347)
Name: NF4148_low_14
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 51979029 - 51979365
Alignment:
| Q |
1 |
ttcaatgagaattcttaattaaaaggaatgatgctctatgaaatttaagcatttctatatttggatgtcttcacatccaaataggttaatgttgtgagnn |
100 |
Q |
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| T |
51979029 |
ttcaatgagaattcttaattaaaaggaatgatgctctatgaaatttaagcatttctatatttggatgtcttcagtt---aataagttaatgttgtgagtt |
51979125 |
T |
|
| Q |
101 |
nnnnnncttcttctagacaattgttttcacatgatgattactacatattcaggagatcaattttgtgtgtgcagatctacaatgctccgatcaatgaatg |
200 |
Q |
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| T |
51979126 |
ttttttcttcttctagacaattgttttcacatgatgattactacatattcaggagatcaattttgtgtgtgcagatctacaatgctccgatcaatgaatg |
51979225 |
T |
|
| Q |
201 |
tcaagcaaagcttgtatttaaacctttgacacctgaatggaaatggaagttaatttatgagcccattcagcatgatgttcgcattctctcaaaaaagatc |
300 |
Q |
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| T |
51979226 |
tcaagcaaagcttgtatttaaacctttgacacctgaatggaaatggaagttaatttatgagcccattcagcatgatgttcgcattctctcaaaaaagatc |
51979325 |
T |
|
| Q |
301 |
ccaattaccagatttgtgaatcttcaggtttgatgatgtc |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
51979326 |
ccaattaccagatttgtgaatcttcaggtttgatgatgtc |
51979365 |
T |
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