View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_low_16 (Length: 311)
Name: NF4148_low_16
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 45165905 - 45165595
Alignment:
| Q |
1 |
ataataattcatacccatgtaaccagagattgatattgatctgaggacatattatgcattggttttcttccagtaagtaattctagaaggacaactccga |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45165905 |
ataataatacatacccatgtaaccagagattgatattgatctgaggacatattatgcattggttttcttccagtaagtaattctagaaggacaactccga |
45165806 |
T |
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| Q |
101 |
aagcatagacatcgctcttatcagttagtttacctgaaaaaagttaccattgttaaattttgttgagtaaaaagaacaaaacatcaagttccatagtccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45165805 |
aagcatagacatcgctcttatcagttagtttacctgaaaaaagttaccattgttaaattttgttgagtaaaaagaacaaaacatcaagttccatagtccg |
45165706 |
T |
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| Q |
201 |
agtcaaagcttaattataatctcatgcacctaatcagtatttatttagcataatcataatttaaaaactaataatatagaccatgtgatatgtactcggg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
45165705 |
agtcaaagcttaattataatctcatgcacctaatcagtatttatttagcataatcataattgaaaaactaataatatataccatgtgatatgtactcggg |
45165606 |
T |
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| Q |
301 |
tgccacatatc |
311 |
Q |
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||||||||||| |
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| T |
45165605 |
tgccacatatc |
45165595 |
T |
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