View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_low_18 (Length: 276)
Name: NF4148_low_18
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 13199072 - 13199320
Alignment:
| Q |
22 |
ctatcaaaggaaaataaagcaaaatgataatctaagaaaattttggatcataaaaaaggatcaaccattttactctttcagcatagatatttgtcgacaa |
121 |
Q |
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| T |
13199072 |
ctatcaaataaaaataaagcaaaataataatctaagaaaaatttggatcataagaaaggatcaaccattttactcttccagcctagatatttatcgacaa |
13199171 |
T |
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| Q |
122 |
aatgatgactatagactctttttggtttgtttgagctatgattctcttgttcatcatctgacatgactctcaaggataagtccatttttaattcacctac |
221 |
Q |
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| T |
13199172 |
aatgatgactatagactctttttggtttgtttgagctatgattctcttgttcatcatctgacatgactctcaaggataagtccatttttaattcacctat |
13199271 |
T |
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| Q |
222 |
aaatagtgtgtgtcacacaca-ttttttaatctcctttttcctttgctt |
269 |
Q |
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| T |
13199272 |
aaatagtgtgtgtcacacacattttttttatctcctttttcctttgctt |
13199320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 13198829 - 13198742
Alignment:
| Q |
142 |
tttggtttgtttgagctatgattctcttgttcatcatctgacatgactctcaaggataagtccatttttaat-tcacctacaaatagt |
228 |
Q |
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| T |
13198829 |
tttgatttgtttgagctatgattctcttgttcatcatctaacatacctctcgaggataggtccatttttcatctcacctaccaatagt |
13198742 |
T |
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