View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4148_low_19 (Length: 273)

Name: NF4148_low_19
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4148_low_19
NF4148_low_19
[»] chr3 (26 HSPs)
chr3 (24-259)||(22457986-22458221)
chr3 (24-259)||(22480967-22481202)
chr3 (20-259)||(22436128-22436367)
chr3 (27-259)||(22467448-22467680)
chr3 (35-259)||(22635003-22635227)
chr3 (20-259)||(22357499-22357738)
chr3 (27-259)||(22629940-22630170)
chr3 (20-259)||(22430667-22430906)
chr3 (20-259)||(22442239-22442478)
chr3 (41-259)||(22620381-22620599)
chr3 (20-259)||(22367421-22367660)
chr3 (20-259)||(30988790-30989029)
chr3 (33-259)||(22656551-22656777)
chr3 (149-259)||(37930357-37930467)
chr3 (35-255)||(22353313-22353533)
chr3 (20-259)||(21946366-21946605)
chr3 (152-259)||(22647669-22647776)
chr3 (20-69)||(22180159-22180208)
chr3 (20-259)||(22115827-22116066)
chr3 (20-74)||(21937895-21937949)
chr3 (20-259)||(22053448-22053687)
chr3 (20-74)||(22028742-22028796)
chr3 (20-74)||(22035259-22035313)
chr3 (20-74)||(22105450-22105504)
chr3 (20-74)||(22187730-22187784)
chr3 (97-183)||(22628096-22628182)
[»] chr1 (4 HSPs)
chr1 (99-259)||(2304971-2305131)
chr1 (107-259)||(34990046-34990198)
chr1 (152-259)||(34976245-34976352)
chr1 (152-259)||(34983356-34983463)
[»] chr5 (1 HSPs)
chr5 (110-255)||(40580766-40580911)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 22458221 - 22457986
Alignment:
Q  24 tgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaagg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22458221 tgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaagg 22458122  T
Q  124 attcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagt 223  Q
    ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458121 atttgtgaaagatgatatggtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagt 22458022  T
Q  224 attgatggaagagcaaaaagttgttgtgttcatgat 259  Q
    ||||||||||||||||||||||||||||||||||||    
T  22458021 attgatggaagagcaaaaagttgttgtgttcatgat 22457986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 22481202 - 22480967
Alignment:
Q  24 tgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaagg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22481202 tgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaagg 22481103  T
Q  124 attcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagt 223  Q
    ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481102 atttgtgaaagatgatatggtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagt 22481003  T
Q  224 attgatggaagagcaaaaagttgttgtgttcatgat 259  Q
    ||||||||||||||||||||||||||||||||||||    
T  22481002 attgatggaagagcaaaaagttgttgtgttcatgat 22480967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 22436367 - 22436128
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| ||||| | |||||||| ||||| |||||||||||||||||||||||||  | |||||||| | |||| | ||||| ||| |||||||| ||||    
T  22436367 gatttgccttactacctcaagtcgtgtttcttgtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctg 22436268  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| ||||||||||| || || | ||  |||||||||||| ||||| | |||||||||| ||| ||| ||| |||| |||||||||| |||||||||||    
T  22436267 aagggttcgtgaaagaagagaggggaaggacattggaagatattgcaaaaggatatttaatagagttggtcaatagaagtttggtgcatgtagtttcaat 22436168  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
     |||||||||||||||| |||||||||| |||||||||||    
T  22436167 aagtattgatggaagagtaaaaagttgtcgtgttcatgat 22436128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 22467680 - 22467448
Alignment:
Q  27 cttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggatt 126  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||  | |||||||| | |||| |  |||| ||| |||||||| |||||||| ||    
T  22467680 cttacaacctcaagtcatgtttcttgtattttggattatatcctgaagactatatagttcattcaaagacgttgactcgccaatggattgctgaagggtt 22467581  T
Q  127 cgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtatt 226  Q
     ||||| || || || |  |  ||||||||||| ||||| || |||||||||| ||| ||||||  |||| |||||||||||||||||||||| ||||||    
T  22467580 tgtgaaggaagacagggggaggacattggaagaggttgctgaaggatatttaatagagttgatccatagaagtttggtgcaagtagtttcaataagtatt 22467481  T
Q  227 gatggaagagcaaaaagttgttgtgttcatgat 259  Q
    |||||||||| |||||||||| |||||||||||    
T  22467480 gatggaagagtaaaaagttgtcgtgttcatgat 22467448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 35 - 259
Target Start/End: Complemental strand, 22635227 - 22635003
Alignment:
Q  35 ctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaag 134  Q
    |||||||||||||| |||||||||||||||||||||||||  | |||||||| | |||| | ||||| ||| |||||||| |||||||| ||||||||||    
T  22635227 ctcaagtcatgtttcttgtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtgaaag 22635128  T
Q  135 atgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaag 234  Q
    | || || | ||  ||||| ||||| |||||||| |||||||||  ||| ||||||  |||| ||||||||||||||||||||| |||||||||||||||    
T  22635127 aagacaggggaaggacatttgaagaggttgcagaaggatatttagtagagttgatccatagaagtttggtgcaagtagtttcaactagtattgatggaag 22635028  T
Q  235 agcaaaaagttgttgtgttcatgat 259  Q
    || |||||||||  | |||||||||    
T  22635027 agtaaaaagttgccgcgttcatgat 22635003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 22357738 - 22357499
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||  | || ||||| | |||| | ||||| ||| |||||||| ||||    
T  22357738 gatttgccttactacctcaagtcatgtttcttgtattttggattatatcctgaagactataaagttcattcaaagacattgactcgacaatggattgctg 22357639  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| || |||||| |  || | | || |||  ||||||| |||||||| |||||||||| ||| || ||   |||| ||||||||||||||| ||||||    
T  22357638 aagggtttgtgaaacaatatggggaaagaacgatggaagaggttgcagaaggatatttaaaagagttaatacatagaagtttggtgcaagtagattcaat 22357539  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
     |||||||||||||||| |||| ||||| |||||||||||    
T  22357538 cagtattgatggaagagtaaaacgttgtcgtgttcatgat 22357499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 22630170 - 22629940
Alignment:
Q  27 cttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggatt 126  Q
    ||||||| |||||||||||||| |||||||||||||| ||||||||||  | |||||||| | ||||  | |||| ||| |||||||| |||||||| ||    
T  22630170 cttacaacctcaagtcatgtttcttgtattttggattctatcctgaagactatatagttcgttcaaaggtgttgactcgccaatggatcgctgaagggtt 22630071  T
Q  127 cgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtatt 226  Q
     |||||||| |  |  | || |||||||||||| |||| ||| |||||||||| ||| ||| || ||||| |||||||||||||||||||||  |||||     
T  22630070 tgtgaaagaagtcaagggaagaacattggaagaggttggagaaggatatttaatagagttggtccgtagaagtttggtgcaagtagtttcaacaagtat- 22629972  T
Q  227 gatggaagagcaaaaagttgttgtgttcatgat 259  Q
     ||||||||| |||||||||| |||| ||||||    
T  22629971 -atggaagagtaaaaagttgtcgtgtacatgat 22629940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 22430906 - 22430667
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| ||| ||| |||||||||||||| ||||||||||||||||||||| |||  | |||||||  | |||| | ||| | | | |||||||| ||||    
T  22430906 gatttgccttgcaacctcaagtcatgtttcttgtattttggattatatcctaaagactatatagtttattcaaagacattaacttgtcaatggattgctg 22430807  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| || ||||||||  | |  | ||  |||||| |||| |||||||| |||||||||| ||| ||||||  |||| ||||||||||||||| ||||||    
T  22430806 aagggtttgtgaaagaaaaaacgggaaggacattgaaagaggttgcagaaggatatttaatagagttgatccatagaagtttggtgcaagtagattcaat 22430707  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
     |||||||||||||||| || ||||||| |||||||||||    
T  22430706 aagtattgatggaagagtaagaagttgtcgtgttcatgat 22430667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 22442478 - 22442239
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| ||| ||| |||||||||||||| |||||||||||||||||||| ||||  | |  || |  | |||| | ||||| ||| |||||||| ||||    
T  22442478 gatttgccttgcaacctcaagtcatgtttcttgtattttggattatatcccgaagactatgaagcttgttcaaagacattgactcgtcaatggatagctg 22442379  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| || ||||||||  || | | ||  ||||||||| | |||||||| |||||||||| ||  || ||| ||||| |||||||||||||||||||||     
T  22442378 aagggtttgtgaaagaatatggggaaaggacattggaaaaggttgcagaaggatatttaaaagtgttaatctgtagaagtttggtgcaagtagtttcaac 22442279  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
     |||||||||||||||| |||||||||  |||||||||||    
T  22442278 cagtattgatggaagagtaaaaagttgccgtgttcatgat 22442239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 259
Target Start/End: Complemental strand, 22620599 - 22620381
Alignment:
Q  41 tcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgata 140  Q
    |||||||| |||||||||||||||||||| |||| || || ||||  | |||| | |||||||||||||||||| |||||||| || || ||||| || |    
T  22620599 tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa 22620500  T
Q  141 gcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaa 240  Q
    | |  || || |||||||| |||||||| ||||| |||||||| ||||||  |||| ||||||||||||||  |||| | || || ||||||| | ||||    
T  22620499 gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaaa 22620400  T
Q  241 aagttgttgtgttcatgat 259  Q
    ||||||||| |||||||||    
T  22620399 aagttgttgcgttcatgat 22620381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 22367660 - 22367421
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| ||| ||| |||||||||||||| ||||| |||||||||||||||||||  |  |  |||| | |||||||||||| ||| |||||||| ||||    
T  22367660 gatttgccttgcaacctcaagtcatgtttcttgtactttggattatatcctgaagactcaaatgttcgttcaaatatattgactcgtcaatggattgctg 22367561  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| || |||||||| || || | ||  ||||||||||| |||||||| ||| |||||| ||| |||||| ||||| ||||||||| ||||| |   ||    
T  22367560 aagggtttgtgaaagaagaaaggggaatgacattggaagaggttgcagaaggacatttaatagagttgatccgtagaagtttggtgcgagtagatgggat 22367461  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
     | |||||||||||||| | | |||||  |||||||||||    
T  22367460 cactattgatggaagagtagacagttgccgtgttcatgat 22367421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 30989029 - 30988790
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| |||||  |||||||||||| ||||||||||||||| ||||||| |||| || |  ||||    |||| | ||||||||| |||||| | ||||    
T  30989029 gatttgccttactctctcaagtcatgcttgttgtattttggaatatatccagaagattatgaagttaaatcaaagagattgattcgacaatgggtagctg 30988930  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| |||||||| || || || |  || || |||||||| |||||||| |||||||||||||| ||||||  |||| | ||||||||||||  |||  |    
T  30988929 aagggttcgtgaaggaggaaagagggaagactttggaagacgttgcagaaggatatttaacagagttgatccatagaagcttggtgcaagtatcttcggt 30988830  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
    |||  ||||||| | ||| ||| ||||| |||||||||||    
T  30988829 tagagttgatggtaaagctaaaggttgtcgtgttcatgat 30988790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 259
Target Start/End: Complemental strand, 22656777 - 22656551
Alignment:
Q  33 atctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaa 132  Q
    |||| |||||||||||||||||||||||| ||||||| |||| || |  ||||    |||| | | |||| ||||||||||| |||||||| || |||||    
T  22656777 atcttaagtcatgtttgttgtattttggaatatatccagaagattatgaagttgaatcaaagagagtgatacggcaatggatagctgaaggttttgtgaa 22656678  T
Q  133 agatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatgga 232  Q
    ||| || || |  ||||| |||||||| |||||||| |||||||||||||| |||||  |  || ||||||| ||||||   ||| |||| ||||| |||    
T  22656677 agaagaaagggggaaaactttggaagaagttgcagaaggatatttaacagagttgattcgccgatgtttggtacaagtatcctcagttagaattgacgga 22656578  T
Q  233 agagcaaaaagttgttgtgttcatgat 259  Q
    | | | |||||||||||||| ||||||    
T  22656577 aaaactaaaagttgttgtgtccatgat 22656551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 259
Target Start/End: Complemental strand, 37930467 - 37930357
Alignment:
Q  149 acattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgtt 248  Q
    ||||||||| | ||||| || |||||||||| ||| || ||| ||||| |||||||||||||||||||||   ||||||||||||||| ||||||||||     
T  37930467 acattggaaaaggttgcggaaggatatttaaaagagttaatctgtagaagtttggtgcaagtagtttcaaccggtattgatggaagagtaaaaagttgtc 37930368  T
Q  249 gtgttcatgat 259  Q
    |||||||||||    
T  37930367 gtgttcatgat 37930357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 255
Target Start/End: Complemental strand, 22353533 - 22353313
Alignment:
Q  35 ctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaag 134  Q
    |||||||||||||| |||||||||||||||||||  ||||  |    ||||  | || ||| ||||| ||| |||||||| ||||| || || |||||||    
T  22353533 ctcaagtcatgtttcttgtattttggattatatctcgaagactacgaagtttattcagatacattgactcgtcaatggattgctgaggggtttgtgaaag 22353434  T
Q  135 atgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaag 234  Q
    |  |  | | ||  ||| ||||||| |||||||| |||||||||| ||| || |||  |||| ||||||||||||||| |||| | ||||||||||||||    
T  22353433 aatacgggggaaggacaatggaagaggttgcagaaggatatttaaaagagttaatccatagaagtttggtgcaagtagattcagtcagtattgatggaag 22353334  T
Q  235 agcaaaaagttgttgtgttca 255  Q
    || |||||||||| |||||||    
T  22353333 agtaaaaagttgtcgtgttca 22353313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 21946366 - 21946605
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| ||| | ||||||||||||| ||||| ||||||||| ||||||| |||| || |  ||||    | || | | ||||||| |||||||| ||||    
T  21946366 gatttgccttgctatctcaagtcatgcttgttttattttggagtatatccagaagattatgaagttaaatcgaagagagtgattcgacaatggatagctg 21946465  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| || ||||| || || || |  || || |||||||| || ||||| |||||||||||||| ||||||  |||| |  |||| ||||||  |||| |    
T  21946466 aagggtttgtgaaggaggaaagagggaagactttggaagaagtggcagaaggatatttaacagagttgatccatagaagcctggttcaagtatcttcact 21946565  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
    ||| |||||||| | ||| ||| ||||| |||||||||||    
T  21946566 tagaattgatggtaaagctaaaggttgtcgtgttcatgat 21946605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 22647776 - 22647669
Alignment:
Q  152 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 251  Q
    |||||||| ||||||||  |||||||||| || ||||||  |||| ||||||| ||||||  |||| |||| |||||||||| | | |||||||| ||||    
T  22647776 ttggaagaagttgcagaacgatatttaactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgctgtg 22647677  T
Q  252 ttcatgat 259  Q
    ||||||||    
T  22647676 ttcatgat 22647669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 22180159 - 22180208
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc 69  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  22180159 gatttgccttactatctcaagtcatgtttgttgtattttggagtatatcc 22180208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 22115827 - 22116066
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||| || |||| || |  ||||    |||| | | | | ||| |||||||| ||||    
T  22115827 gatttgccttactatctcaagtcatgtttgttgtattttggagtatacccagaagattttgaagttaaatcaaagagaatcactcgacaatggatagctg 22115926  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| || ||||| || || || | ||| ||  |||| || || ||||| |||||| ||||||| ||||||  |||| || |||| ||||||  |||  |    
T  22115927 aagggtttgtgaaggaggaaaggggaaagactatggatgaagtggcagagggatatataacagagttgatccatagaagtatggttcaagtatcttcgct 22116026  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
    ||| |||||||| | ||| ||| ||||| |||||||||||    
T  22116027 tagaattgatggcaaagctaaaggttgtcgtgttcatgat 22116066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 21937895 - 21937949
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag 74  Q
    |||||| ||||| ||||||||||||| ||||||||||||||| ||||||| ||||    
T  21937895 gatttgccttactatctcaagtcatgcttgttgtattttggagtatatccagaag 21937949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 22053448 - 22053687
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctg 119  Q
    |||||| ||||| ||||| ||||||| ||||||||||||||| ||||||| |||| || |  ||||  | ||||   | ||||||| |||||||| || |    
T  22053448 gatttgccttactatctcgagtcatgcttgttgtattttggagtatatccagaagattatgaagttaattcaaagcgagtgattcgacaatggatagcag 22053547  T
Q  120 aaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaat 219  Q
    |||| || ||||| || || |  |  || || |||||||| || ||||| ||||||||| |||| ||||||  |||| |  |||| ||||||  |||| |    
T  22053548 aagggtttgtgaaggaggaaaaggggaagactttggaagaagtggcagaaggatatttatcagagttgatccatagaagcctggttcaagtatcttcact 22053647  T
Q  220 tagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
    ||| |||||||| | ||| ||| | ||| |||||||||||    
T  22053648 tagaattgatggcaaagctaaaggatgtcgtgttcatgat 22053687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 22028742 - 22028796
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag 74  Q
    |||||| ||||| |||||||| |||| ||||||||||||||| ||||||| ||||    
T  22028742 gatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag 22028796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 22035259 - 22035313
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag 74  Q
    |||||| ||||| |||||||| |||| ||||||||||||||| ||||||| ||||    
T  22035259 gatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag 22035313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 22105450 - 22105504
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag 74  Q
    |||||| ||||| ||||||||||||| |||||||| |||||| ||||||| ||||    
T  22105450 gatttgccttactatctcaagtcatgcttgttgtactttggagtatatccagaag 22105504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 22187730 - 22187784
Alignment:
Q  20 gatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag 74  Q
    |||||| ||||| |||||||| |||| ||||||||||||||| ||||||| ||||    
T  22187730 gatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag 22187784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 22628182 - 22628096
Alignment:
Q  97 attgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacaga 183  Q
    ||||||||| |||| ||| ||||||||||| |||||||| || || | |||||| || ||||| ||  |||| ||||||||||||||    
T  22628182 attgattcgacaattgatagctgaaggatttgtgaaagaagaaaggggaaaaactttcgaagaagtcacagaaggatatttaacaga 22628096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 2305131 - 2304971
Alignment:
Q  99 tgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagagg 198  Q
    ||||||| || ||||| |||||||| || ||||| || || || |  || || |||||||| |||||||| ||||||||| |||| |||||  || || |    
T  2305131 tgattcgacagtggatagctgaagggtttgtgaaggaggaaagtgggaagactttggaagaagttgcagaaggatatttatcagagttgattcgtcgaag 2305032  T
Q  199 tttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
    |||||||||||||   ||| |||| |||||||||| | | |||||||||||||||||||||    
T  2305031 tttggtgcaagtatcctcagttagcattgatggaaaatctaaaagttgttgtgttcatgat 2304971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 259
Target Start/End: Original strand, 34990046 - 34990198
Alignment:
Q  107 caatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgc 206  Q
    |||||||| |||||||| || |||||||| || || |  || || |||||||| |||| |||  ||||||||||||| |||||  ||||| |||||||||    
T  34990046 caatggatagctgaagggtttgtgaaagaggaaagtgggaagactttggaagaagttgaagaaagatatttaacagagttgattcgtagaagtttggtgc 34990145  T
Q  207 aagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat 259  Q
    |||||   ||| |||| |||||||||| | | | |||||||||||||||||||    
T  34990146 aagtatcctcagttagcattgatggaaaaactagaagttgttgtgttcatgat 34990198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 34976245 - 34976352
Alignment:
Q  152 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 251  Q
    |||||||| |||||| | |||||||||||||| |||||  || || ||||||||||||||   ||| |||| ||||||||||   | |||||||||||||    
T  34976245 ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg 34976344  T
Q  252 ttcatgat 259  Q
    ||||||||    
T  34976345 ttcatgat 34976352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 34983356 - 34983463
Alignment:
Q  152 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 251  Q
    |||||||| |||||| | |||||||||||||| |||||  || || ||||||||||||||   ||| |||| ||||||||||   | |||||||||||||    
T  34983356 ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg 34983455  T
Q  252 ttcatgat 259  Q
    ||||||||    
T  34983456 ttcatgat 34983463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 40580766 - 40580911
Alignment:
Q  110 tggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaag 209  Q
    ||||| |||||||| || ||||| || || || | ||| || |||||||| ||||| || | ||||||||| || |||||  || |  ||||||||||||    
T  40580766 tggatagctgaagggtttgtgaaggaggaaagtggaaagactttggaagaagttgctgaagtatatttaactgagttgattcgtcgtagtttggtgcaag 40580865  T
Q  210 tagtttcaattagtattgatggaagagcaaaaagttgttgtgttca 255  Q
    ||   |||||||| |||||||||| | | |||||||||| ||||||    
T  40580866 tatcctcaattagaattgatggaaaaactaaaagttgttttgttca 40580911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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