View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4148_low_21 (Length: 264)

Name: NF4148_low_21
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4148_low_21
NF4148_low_21
[»] chr1 (2 HSPs)
chr1 (18-126)||(7521358-7521466)
chr1 (203-250)||(7521232-7521279)
[»] chr7 (2 HSPs)
chr7 (51-126)||(261558-261634)
chr7 (203-244)||(261719-261760)
[»] chr5 (2 HSPs)
chr5 (203-246)||(31933465-31933508)
chr5 (203-244)||(30085018-30085059)
[»] chr4 (1 HSPs)
chr4 (203-244)||(50859285-50859326)
[»] chr3 (1 HSPs)
chr3 (203-243)||(25045491-25045531)
[»] chr2 (1 HSPs)
chr2 (203-243)||(6479307-6479347)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 7521466 - 7521358
Alignment:
Q  18 aacaagcctatattgttttatcaaaattgaagctttaccattgtatggataaacaacgtatccaacaacaattttgtcgatagctgtattactattgcca 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7521466 aacaagcctatattgttttatcaaaattgaaactttaccattgtatggataaacaacgtatccaacaacaattttgtcgatagctgtattactattgcca 7521367  T
Q  118 ccattccat 126  Q
    |||||||||    
T  7521366 ccattccat 7521358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 7521279 - 7521232
Alignment:
Q  203 tgtaattgtgttattaatatgttccattccattgaatacacctcaaga 250  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  7521279 tgtaattgtgttattaatgtgttccattccattgaatacacgtcaaga 7521232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 261558 - 261634
Alignment:
Q  51 tttaccattgtatggataaacaacgtat-ccaacaacaattttgtcgatagctgtattactattgccaccattccat 126  Q
    ||||||||||||||||||| ||| |||| |||||||||||||| | ||||| |||| ||||| | |||| |||||||    
T  261558 tttaccattgtatggataagcaatgtatcccaacaacaattttattgatagttgtaatactactaccactattccat 261634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 261719 - 261760
Alignment:
Q  203 tgtaattgtgttattaatatgttccattccattgaatacacc 244  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  261719 tgtaattgtgttattaatgtgttccatttcattggatacacc 261760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 31933465 - 31933508
Alignment:
Q  203 tgtaattgtgttattaatatgttccattccattgaatacacctc 246  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||    
T  31933465 tgtaattgtattattaatgtgtttcattccattgaatacacctc 31933508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 30085059 - 30085018
Alignment:
Q  203 tgtaattgtgttattaatatgttccattccattgaatacacc 244  Q
    |||||||| ||||||||| ||||||||||||||| |||||||    
T  30085059 tgtaattgagttattaatgtgttccattccattggatacacc 30085018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 50859326 - 50859285
Alignment:
Q  203 tgtaattgtgttattaatatgttccattccattgaatacacc 244  Q
    ||||||||| |||||||| ||||||||||||||| |||||||    
T  50859326 tgtaattgtattattaatgtgttccattccattggatacacc 50859285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 25045531 - 25045491
Alignment:
Q  203 tgtaattgtgttattaatatgttccattccattgaatacac 243  Q
    |||||||| ||||||||| ||||||||||||||| ||||||    
T  25045531 tgtaattgagttattaatgtgttccattccattggatacac 25045491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 6479347 - 6479307
Alignment:
Q  203 tgtaattgtgttattaatatgttccattccattgaatacac 243  Q
    ||||||||| |||||| ||||||||||||||||| ||||||    
T  6479347 tgtaattgtattattagtatgttccattccattggatacac 6479307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University