View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_low_22 (Length: 257)
Name: NF4148_low_22
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28386253 - 28386010
Alignment:
| Q |
1 |
accactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtatta |
100 |
Q |
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| T |
28386253 |
accactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatgaagcggttggggatttcgttgagaagaatccaccggattgtatta |
28386154 |
T |
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| Q |
101 |
ttgctgattccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386153 |
ttgctgactccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctt |
28386054 |
T |
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| Q |
201 |
tcattcccttcgaacaaacaatttacttcatacagatgctgatg |
244 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28386053 |
tcattctcttcgaacaaacaatttacttcatacagatgctgatg |
28386010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12541601 - 12541369
Alignment:
| Q |
1 |
accactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtatta |
100 |
Q |
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| T |
12541601 |
accactgaccccattacctcttggaaaattcacaatggtgcaatgctcctccatggacccattgatgattttgttgtgaataatccacctgattgtatca |
12541502 |
T |
|
| Q |
101 |
ttgctgattccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctt |
200 |
Q |
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| T |
12541501 |
ttgccgactcttcttactcatggggtaatgacttggctcgtaagctacaagtacccaatttcacattcaatggatcctctctttttgctgtctccctcat |
12541402 |
T |
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| Q |
201 |
tcattcccttcgaacaaacaatttacttcatac |
233 |
Q |
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| T |
12541401 |
ggaatcccttagaaaaaacaatttgcttcatac |
12541369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 13449265 - 13449125
Alignment:
| Q |
15 |
caccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgca |
114 |
Q |
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| T |
13449265 |
caccacttggaagatccatactggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacg |
13449166 |
T |
|
| Q |
115 |
ttctcatgggctaatgacttggcccacaagcttcaaatccc |
155 |
Q |
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| | |||||| ||||||||||||| | ||| |||| ||||| |
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| T |
13449165 |
tacccatgggttaatgacttggccgataagtttcagatccc |
13449125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 13441116 - 13440962
Alignment:
| Q |
1 |
accactgaccctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtatta |
100 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||| |||||||||||||||| ||| | | ||| ||||||| | ||||| ||||||| |||||||| | |
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| T |
13441116 |
accactgactctatgacctcttggaagatccaccgtggcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatca |
13441017 |
T |
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| Q |
101 |
ttgctgattccgcattctcatgggctaatgacttggcccacaagcttcaaatccc |
155 |
Q |
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| | || ||||||| | ||||||||||||||||||| || |||||||| ||||| |
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| T |
13441016 |
tctccgactccgcatacccatgggctaatgacttggcgcataagcttcagatccc |
13440962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 13462281 - 13462229
Alignment:
| Q |
20 |
cttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttc |
72 |
Q |
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|||||||||||||| ||||||||||||||||| ||| ||| ||| ||||||| |
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| T |
13462281 |
cttggaagatccatcatggcgcaatgctcctccatggacccattgaggatttc |
13462229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 3416812 - 3416953
Alignment:
| Q |
14 |
tcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgc |
113 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||| || ||| ||| ||||||| || | || ||||||| |||||||| || | || || || |
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| T |
3416812 |
tcaccacttggaagatcaacaatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgc |
3416911 |
T |
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| Q |
114 |
attctcatgggctaatgacttggcccacaagcttcaaatccc |
155 |
Q |
| |
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|| | |||||| ||||||||||||||| |||||||||||||| |
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| T |
3416912 |
atacccatgggttaatgacttggcccagaagcttcaaatccc |
3416953 |
T |
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