View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4148_low_23 (Length: 255)
Name: NF4148_low_23
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 22457481 - 22457238
Alignment:
| Q |
1 |
tccctacaaactctacgtgatgtttatttagatggcggcgaaaatgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22457481 |
tccctacaaactctacgtgatgtttatttagatggcggcgaaaatgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattgg |
22457382 |
T |
|
| Q |
101 |
tcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatgg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22457381 |
tcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaagtggagaaactacaaattcgcgcaaacggatatga |
22457282 |
T |
|
| Q |
201 |
cacagttattgacatgcatttgaattcaccaccacctatgcttc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22457281 |
cacagttattgacatgcatttgaattcaccaccacctatgcttc |
22457238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 22480462 - 22480219
Alignment:
| Q |
1 |
tccctacaaactctacgtgatgtttatttagatggcggcgaaaatgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22480462 |
tccctacaaactctacgtgatgtttatttagatggcggcgaaaatgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattgg |
22480363 |
T |
|
| Q |
101 |
tcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatgg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22480362 |
tcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaagtggagaaactacaaattcgcgcaaacggatatga |
22480263 |
T |
|
| Q |
201 |
cacagttattgacatgcatttgaattcaccaccacctatgcttc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22480262 |
cacagttattgacatgcatttgaattcaccaccacctatgcttc |
22480219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 22629367 - 22629232
Alignment:
| Q |
48 |
agtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctca |
147 |
Q |
| |
|
||||||| |||||||| |||| |||||||| ||||| || |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
22629367 |
agtggtagagctaatcgaagatctaggaaagctaaatcagctaagggaattggtcttgctcggtgttaggagtaaatatatgagtgctatatcttcctca |
22629268 |
T |
|
| Q |
148 |
atcaatgagatgcaaaaaatggagaaactacaaatt |
183 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| |
|
|
| T |
22629267 |
atcaataagatgcaacaattggagaaactacaaatt |
22629232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 22366840 - 22366652
Alignment:
| Q |
56 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
155 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||| | |
|
|
| T |
22366840 |
agctaattgaagagctaggaaaactaaagcagctaagggaattgggcttggccggtgttaggagtaaatatatgagtgctatatcttcttcaatcaataa |
22366741 |
T |
|
| Q |
156 |
gatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgcttc |
244 |
Q |
| |
|
||||||| || ||||||||||| | ||| | | | || ||||| ||| | ||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
22366740 |
gatgcaacaactggagaaactaaatattagtggagtcgaatatgagacattcattgatctggatttgaattcacccccacctatgcttc |
22366652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 22441661 - 22441540
Alignment:
| Q |
56 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
155 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||| |||||| ||||| ||||||||||||| ||| |||||||||||||||| ||||||||| || |
|
|
| T |
22441661 |
agctaatccaagagctaggaaagctaaaacagctaaggaaattgggcttgaccggtgttaggagtaaatatatgagtgctatatctttctcaatcaacga |
22441562 |
T |
|
| Q |
156 |
gatgcaaaaaatggagaaacta |
177 |
Q |
| |
|
||||||| || ||||||||||| |
|
|
| T |
22441561 |
gatgcaacaattggagaaacta |
22441540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 22352726 - 22352605
Alignment:
| Q |
56 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
155 |
Q |
| |
|
||||||| ||||||||||||| ||||| || |||||||| ||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||| | |
|
|
| T |
22352726 |
agctaattgaagagctaggaaagctaaatcagctaagggagttggtcttgtacggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatca |
22352627 |
T |
|
| Q |
156 |
gatgcaaaaaatggagaaacta |
177 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
22352626 |
gatgcaaaaattggagaaacta |
22352605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 22356897 - 22356785
Alignment:
| Q |
65 |
aagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaa |
164 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||| ||||| |||| ||| |||| ||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22356897 |
aagagctgggaaaactaaagcagcttagggaattgagcttgagcggtcttaagagtaaatatatgagtggtatatcttcctcaatcaatgagatgcaaaa |
22356798 |
T |
|
| Q |
165 |
aatggagaaacta |
177 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
22356797 |
attggagaaacta |
22356785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 22634382 - 22634194
Alignment:
| Q |
48 |
agtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctca |
147 |
Q |
| |
|
||||||| || |||| ||||||||||||| |||||||| || |||||||| |||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
22634382 |
agtggtagagttaatagaagagctaggaaagctaaagcagcttagggaattaagcttggtcggtgttaggagtaaatatatgagtgctatatcttcctca |
22634283 |
T |
|
| Q |
148 |
atcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacc |
236 |
Q |
| |
|
||||| |||||||| || ||||||||||| | ||| | | || | ||||| |||| | ||||| ||| ||||||||||||| ||||| |
|
|
| T |
22634282 |
atcaacaagatgcaacaattggagaaactaaatattagaggaatcagatataacacattcattgatatggatttgaattcacccccacc |
22634194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 22466864 - 22466742
Alignment:
| Q |
56 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
155 |
Q |
| |
|
||||||| |||||||||||||| ||||| | |||| ||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||| | |
|
|
| T |
22466864 |
agctaattcaagagctaggaaagctaaataagataagaaaattgagcttgataggtgttaggagtaaatatatgagtgctatatcttcctcaatcaatca |
22466765 |
T |
|
| Q |
156 |
gatgcaaaaaatggagaaactac |
178 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
22466764 |
aatgcaacaaatggagaaactac |
22466742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 22430119 - 22430008
Alignment:
| Q |
66 |
agagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaa |
165 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||| |||| ||||||| ||||| ||| ||||||||| ||| ||||||||||||| ||||||| || |
|
|
| T |
22430119 |
agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa |
22430020 |
T |
|
| Q |
166 |
atggagaaacta |
177 |
Q |
| |
|
||||||||||| |
|
|
| T |
22430019 |
ttggagaaacta |
22430008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 37929672 - 37929608
Alignment:
| Q |
56 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagt |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||||||| |||| ||||||||||||| |
|
|
| T |
37929672 |
agctaatccaagagctaggaaagctaaaacagctaagggaattgggcttggccggtgttaggagt |
37929608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 22435547 - 22435442
Alignment:
| Q |
56 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
155 |
Q |
| |
|
|||||||| |||||||||||| |||| || || |||||||||| |||| | | |||||| || ||| ||||||||||||||||||||||||||| | |
|
|
| T |
22435547 |
agctaatcatagagctaggaaagctaacacagcttagggaattgggcttggttgttgttagtggtaaatatatgagtgctatatcttcctcaatcaataa |
22435448 |
T |
|
| Q |
156 |
gatgca |
161 |
Q |
| |
|
|||||| |
|
|
| T |
22435447 |
gatgca |
22435442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University