View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4148_low_27 (Length: 248)

Name: NF4148_low_27
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4148_low_27
NF4148_low_27
[»] chr6 (1 HSPs)
chr6 (12-63)||(7822059-7822110)
[»] chr8 (4 HSPs)
chr8 (6-63)||(8036993-8037050)
chr8 (6-63)||(33074555-33074612)
chr8 (26-59)||(8036983-8037016)
chr8 (26-59)||(33074545-33074578)
[»] chr7 (4 HSPs)
chr7 (12-63)||(42026115-42026167)
chr7 (15-57)||(15336683-15336725)
chr7 (6-52)||(47943570-47943616)
chr7 (6-52)||(47949000-47949046)
[»] chr4 (2 HSPs)
chr4 (6-63)||(2333053-2333110)
chr4 (6-63)||(48093534-48093590)
[»] chr3 (3 HSPs)
chr3 (12-63)||(37267763-37267814)
chr3 (6-52)||(13220-13266)
chr3 (12-52)||(51329542-51329582)
[»] chr2 (1 HSPs)
chr2 (26-63)||(44073228-44073265)
[»] scaffold0039 (1 HSPs)
scaffold0039 (12-52)||(107039-107079)


Alignment Details
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 7822059 - 7822110
Alignment:
Q  12 agagaatgtgagaaaatgagagtaaggaggagagaatgtgatgaaatgtgag 63  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  7822059 agagaatgtgagaaaatgagagtgaggaggagagaatgtgaggaaatgtgag 7822110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 8036993 - 8037050
Alignment:
Q  6 aggagcagagaatgtgagaaaatgagagtaaggaggagagaatgtgatgaaatgtgag 63  Q
    ||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  8036993 aggaggagagaatgtgaggaaatgagagtaaggaggagagaatgcgaggaaatgtgag 8037050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 33074555 - 33074612
Alignment:
Q  6 aggagcagagaatgtgagaaaatgagagtaaggaggagagaatgtgatgaaatgtgag 63  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  33074555 aggaggagagaatgtgaggaaatgagagtaaggaggagagaatgtgagtaaatgtgag 33074612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 8036983 - 8037016
Alignment:
Q  26 aatgagagtaaggaggagagaatgtgatgaaatg 59  Q
    ||||||||||||||||||||||||||| ||||||    
T  8036983 aatgagagtaaggaggagagaatgtgaggaaatg 8037016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 33074545 - 33074578
Alignment:
Q  26 aatgagagtaaggaggagagaatgtgatgaaatg 59  Q
    ||||||||||||||||||||||||||| ||||||    
T  33074545 aatgagagtaaggaggagagaatgtgaggaaatg 33074578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 42026167 - 42026115
Alignment:
Q  12 agagaatgtgag-aaaatgagagtaaggaggagagaatgtgatgaaatgtgag 63  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  42026167 agagaatgtgagcaaaatgagagtaaggaggagagaatgtgaggaaatgtgag 42026115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 15336725 - 15336683
Alignment:
Q  15 gaatgtgagaaaatgagagtaaggaggagagaatgtgatgaaa 57  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
T  15336725 gaatgtgaggaaatgagagtaaggaggagagaatgtgaggaaa 15336683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 47943616 - 47943570
Alignment:
Q  6 aggagcagagaatgtgagaaaatgagagtaaggaggagagaatgtga 52  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  47943616 aggaggagagaatttgaggaaatgagagtaaggaggagagaatgtga 47943570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 47949046 - 47949000
Alignment:
Q  6 aggagcagagaatgtgagaaaatgagagtaaggaggagagaatgtga 52  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  47949046 aggaggagagaatttgaggaaatgagagtaaggaggagagaatgtga 47949000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 2333110 - 2333053
Alignment:
Q  6 aggagcagagaatgtgagaaaatgagagtaaggaggagagaatgtgatgaaatgtgag 63  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||| | ||||||||||    
T  2333110 aggaggagagtatgtgaggaaatgagagtaaggaggagagaatgtaaggaaatgtgag 2333053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 48093590 - 48093534
Alignment:
Q  6 aggagcagagaatgtgagaaaatgagagtaaggaggagagaatgtgatgaaatgtgag 63  Q
    ||||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  48093590 aggaggagagaatgtgaggaa-tgagagtaaggaggagagaatgtgaggaaatgtgag 48093534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 37267763 - 37267814
Alignment:
Q  12 agagaatgtgagaaaatgagagtaaggaggagagaatgtgatgaaatgtgag 63  Q
    |||||||||||| ||||||||||||||| |||||||||||| || |||||||    
T  37267763 agagaatgtgaggaaatgagagtaaggatgagagaatgtgaggagatgtgag 37267814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 13266 - 13220
Alignment:
Q  6 aggagcagagaatgtgagaaaatgagagtaaggaggagagaatgtga 52  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||||    
T  13266 aggaggagagaatgtgaggaaatcagagtaaggaggagagaatgtga 13220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 51329542 - 51329582
Alignment:
Q  12 agagaatgtgagaaaatgagagtaaggaggagagaatgtga 52  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  51329542 agagaatgtgaggaaatgagagtaaggaggaaagaatgtga 51329582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 44073265 - 44073228
Alignment:
Q  26 aatgagagtaaggaggagagaatgtgatgaaatgtgag 63  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  44073265 aatgagagtaaggaggagagaatgtgaggaaatgtgag 44073228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 107079 - 107039
Alignment:
Q  12 agagaatgtgagaaaatgagagtaaggaggagagaatgtga 52  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  107079 agaggatgtgaggaaatgagagtaaggaggagagaatgtga 107039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University