View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4148_low_32 (Length: 236)

Name: NF4148_low_32
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4148_low_32
NF4148_low_32
[»] chr4 (8 HSPs)
chr4 (140-218)||(38934870-38934948)
chr4 (153-191)||(6520090-6520128)
chr4 (82-115)||(38934957-38934990)
chr4 (153-200)||(21266886-21266933)
chr4 (156-191)||(43183000-43183035)
chr4 (155-188)||(41520976-41521009)
chr4 (155-187)||(35823399-35823431)
chr4 (151-191)||(46409483-46409523)
[»] chr3 (5 HSPs)
chr3 (153-189)||(5702182-5702218)
chr3 (153-187)||(2453836-2453870)
chr3 (153-187)||(30200849-30200883)
chr3 (163-191)||(2662111-2662139)
chr3 (155-187)||(10594700-10594732)
[»] chr6 (2 HSPs)
chr6 (156-191)||(28046185-28046220)
chr6 (162-191)||(19554172-19554201)
[»] chr8 (1 HSPs)
chr8 (153-187)||(12910810-12910844)
[»] chr5 (6 HSPs)
chr5 (153-203)||(7630180-7630230)
chr5 (153-187)||(11844442-11844476)
chr5 (163-203)||(5246170-5246210)
chr5 (163-191)||(13409447-13409475)
chr5 (155-191)||(30893952-30893988)
chr5 (163-191)||(34206246-34206274)
[»] chr2 (5 HSPs)
chr2 (153-191)||(37320521-37320559)
chr2 (153-194)||(24393261-24393302)
chr2 (155-187)||(4897566-4897598)
chr2 (155-187)||(4944960-4944992)
chr2 (155-187)||(40967377-40967409)
[»] chr7 (3 HSPs)
chr7 (154-187)||(1311807-1311840)
chr7 (155-184)||(44941419-44941448)
chr7 (163-191)||(45425472-45425500)
[»] chr1 (4 HSPs)
chr1 (153-186)||(30561747-30561780)
chr1 (153-194)||(34808567-34808608)
chr1 (155-187)||(35011416-35011448)
chr1 (155-187)||(36467031-36467063)


Alignment Details
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 38934948 - 38934870
Alignment:
Q  140 gtggtggttgtgatcgaaccttaaaccttgcatatattatgcattgtctttaacatttgagttatggagtactatttac 218  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |  ||||||| | ||||||||||||    
T  38934948 gtggcggttgtgttcgaaccttaaaccttgcatatattatgcattgtctctaataactgagttaagaagtactatttac 38934870  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 6520128 - 6520090
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtcttta 191  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  6520128 tcgaacctcaaaccttgcatatattatgcattgtcttta 6520090  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 38934990 - 38934957
Alignment:
Q  82 taaatgttaattattatgttaatatgttattgac 115  Q
    ||||||||||||||||||||||||||||||||||    
T  38934990 taaatgttaattattatgttaatatgttattgac 38934957  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 21266886 - 21266933
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtctttaacatttgag 200  Q
    |||||||  ||||||| ||||||||||||||||||||||||| |||||    
T  21266886 tcgaaccccaaaccttacatatattatgcattgtctttaacaattgag 21266933  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 43183000 - 43183035
Alignment:
Q  156 aaccttaaaccttgcatatattatgcattgtcttta 191  Q
    ||||||| ||||||||||||||||||||||||||||    
T  43183000 aaccttagaccttgcatatattatgcattgtcttta 43183035  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 41521009 - 41520976
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtct 188  Q
    ||||||| ||||||||||||||||||||||||||    
T  41521009 gaaccttgaaccttgcatatattatgcattgtct 41520976  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 35823431 - 35823399
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtc 187  Q
    ||||||||||||||||||||||||||| |||||    
T  35823431 gaaccttaaaccttgcatatattatgccttgtc 35823399  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 46409483 - 46409523
Alignment:
Q  151 gatcgaaccttaaaccttgcatatattatgcattgtcttta 191  Q
    ||||||||| | ||| |||||||||||||||||||||||||    
T  46409483 gatcgaaccctgaactttgcatatattatgcattgtcttta 46409523  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 5702182 - 5702218
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtctt 189  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5702182 tcgaacctcaaaccttgcatatattatgcattgtctt 5702218  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 2453870 - 2453836
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtc 187  Q
    ||||||| |||||||||||||||||||||||||||    
T  2453870 tcgaaccctaaaccttgcatatattatgcattgtc 2453836  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 30200883 - 30200849
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtc 187  Q
    |||||||| ||||||||||||||||||||||||||    
T  30200883 tcgaacctcaaaccttgcatatattatgcattgtc 30200849  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 2662139 - 2662111
Alignment:
Q  163 aaccttgcatatattatgcattgtcttta 191  Q
    |||||||||||||||||||||||||||||    
T  2662139 aaccttgcatatattatgcattgtcttta 2662111  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 10594732 - 10594700
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtc 187  Q
    ||||| |||||||||||||||||||||||||||    
T  10594732 gaaccctaaaccttgcatatattatgcattgtc 10594700  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 28046185 - 28046220
Alignment:
Q  156 aaccttaaaccttgcatatattatgcattgtcttta 191  Q
    ||||| ||||||||||||||||||||||||||||||    
T  28046185 aacctcaaaccttgcatatattatgcattgtcttta 28046220  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 19554201 - 19554172
Alignment:
Q  162 aaaccttgcatatattatgcattgtcttta 191  Q
    ||||||||||||||||||||||||||||||    
T  19554201 aaaccttgcatatattatgcattgtcttta 19554172  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 12910810 - 12910844
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtc 187  Q
    |||||||||| ||||||||||||||||||||||||    
T  12910810 tcgaaccttagaccttgcatatattatgcattgtc 12910844  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 7630180 - 7630230
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtctttaacatttgagtta 203  Q
    ||||||| || || ||||||||||||||||||||||||| ||| |||||||    
T  7630180 tcgaaccatagacattgcatatattatgcattgtctttagcatctgagtta 7630230  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 11844442 - 11844476
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtc 187  Q
    ||||||| |||||||||||||||||||||||||||    
T  11844442 tcgaaccctaaaccttgcatatattatgcattgtc 11844476  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 5246170 - 5246210
Alignment:
Q  163 aaccttgcatatattatgcattgtctttaacatttgagtta 203  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  5246170 aaccttgcatatattatgcattgtctataccaattgagtta 5246210  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 13409475 - 13409447
Alignment:
Q  163 aaccttgcatatattatgcattgtcttta 191  Q
    |||||||||||||||||||||||||||||    
T  13409475 aaccttgcatatattatgcattgtcttta 13409447  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 30893988 - 30893952
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtcttta 191  Q
    |||||| | ||||||||||||||||||||||||||||    
T  30893988 gaacctcataccttgcatatattatgcattgtcttta 30893952  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 34206274 - 34206246
Alignment:
Q  163 aaccttgcatatattatgcattgtcttta 191  Q
    |||||||||||||||||||||||||||||    
T  34206274 aaccttgcatatattatgcattgtcttta 34206246  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 37320521 - 37320559
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtcttta 191  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  37320521 tcgaacctcgaaccttgcatatattatgcattgtcttta 37320559  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 24393302 - 24393261
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtctttaaca 194  Q
    |||||||| | |||||||||||||||||||||||| ||||||    
T  24393302 tcgaacctcagaccttgcatatattatgcattgtccttaaca 24393261  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 4897598 - 4897566
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtc 187  Q
    ||||| |||||||||||||||||||||||||||    
T  4897598 gaaccataaaccttgcatatattatgcattgtc 4897566  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 4944992 - 4944960
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtc 187  Q
    ||||| |||||||||||||||||||||||||||    
T  4944992 gaaccataaaccttgcatatattatgcattgtc 4944960  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 40967377 - 40967409
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtc 187  Q
    |||||| ||||||||||||||||||||||||||    
T  40967377 gaacctcaaaccttgcatatattatgcattgtc 40967409  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 1311807 - 1311840
Alignment:
Q  154 cgaaccttaaaccttgcatatattatgcattgtc 187  Q
    ||||||||||||||||||||| ||||||||||||    
T  1311807 cgaaccttaaaccttgcatattttatgcattgtc 1311840  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 184
Target Start/End: Original strand, 44941419 - 44941448
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcatt 184  Q
    ||||||||||||||||||||||||||||||    
T  44941419 gaaccttaaaccttgcatatattatgcatt 44941448  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 45425500 - 45425472
Alignment:
Q  163 aaccttgcatatattatgcattgtcttta 191  Q
    |||||||||||||||||||||||||||||    
T  45425500 aaccttgcatatattatgcattgtcttta 45425472  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 30561780 - 30561747
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgt 186  Q
    |||||||||| |||||||||||||||||||||||    
T  30561780 tcgaaccttagaccttgcatatattatgcattgt 30561747  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 34808567 - 34808608
Alignment:
Q  153 tcgaaccttaaaccttgcatatattatgcattgtctttaaca 194  Q
    ||||||||  ||||||||||||||||||||||||| ||||||    
T  34808567 tcgaacctcgaaccttgcatatattatgcattgtccttaaca 34808608  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 35011448 - 35011416
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtc 187  Q
    ||||||| |||||||||||||||||||||||||    
T  35011448 gaaccttgaaccttgcatatattatgcattgtc 35011416  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 36467031 - 36467063
Alignment:
Q  155 gaaccttaaaccttgcatatattatgcattgtc 187  Q
    |||||||| ||||||||||||||||||||||||    
T  36467031 gaaccttataccttgcatatattatgcattgtc 36467063  T

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