View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4148_low_34 (Length: 229)
Name: NF4148_low_34
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4148_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 27287130 - 27287346
Alignment:
| Q |
6 |
tatgttatgcgaggattatcatttgtaatctttgttctctattgaaatcttaaatttgttaacaaataatacaatgcatgaagtgattacacttgtgatg |
105 |
Q |
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| T |
27287130 |
tatgttatgcaaggattatcatttgtaatctttgttctctattgaaatcttaaatt-gttaacaaataatacaatgcatgaagtgattacacttgtgatg |
27287228 |
T |
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| Q |
106 |
actattattgagaaatagatatccaagatccaaatttcttaaatctaacagttttaacttcaccgtaaattaacaactatatatagggaatccacttggt |
205 |
Q |
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| T |
27287229 |
actattattgagaaatagatatccaagatccaaatttcttaaatccaacagttttaacttcaccgtaaattaacaactatatatagggaatccacttggt |
27287328 |
T |
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| Q |
206 |
tagtttattatttgggtt |
223 |
Q |
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|||||||||||||||||| |
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| T |
27287329 |
tagtttattatttgggtt |
27287346 |
T |
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