View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4148_low_9 (Length: 400)

Name: NF4148_low_9
Description: NF4148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4148_low_9
NF4148_low_9
[»] chr7 (28 HSPs)
chr7 (19-337)||(4643673-4643987)
chr7 (225-377)||(4712056-4712208)
chr7 (225-377)||(4845996-4846148)
chr7 (19-161)||(4845827-4845969)
chr7 (19-161)||(4711887-4712029)
chr7 (23-158)||(4663135-4663267)
chr7 (19-161)||(4631068-4631207)
chr7 (19-161)||(4667079-4667221)
chr7 (219-337)||(4697165-4697283)
chr7 (238-394)||(4647471-4647625)
chr7 (225-337)||(4636859-4636971)
chr7 (219-383)||(4653476-4653640)
chr7 (225-360)||(4666917-4667052)
chr7 (219-398)||(4783810-4783989)
chr7 (219-376)||(4816239-4816396)
chr7 (19-161)||(4672844-4672983)
chr7 (225-340)||(4662990-4663105)
chr7 (225-340)||(4672675-4672790)
chr7 (224-334)||(4863927-4864037)
chr7 (19-160)||(4697005-4697143)
chr7 (19-161)||(4864063-4864202)
chr7 (26-171)||(4653651-4653793)
chr7 (219-295)||(4630971-4631047)
chr7 (113-161)||(4783741-4783789)
chr7 (113-161)||(4816170-4816218)
chr7 (19-74)||(4783650-4783705)
chr7 (19-74)||(4816079-4816134)
chr7 (113-161)||(4636998-4637046)
[»] chr4 (2 HSPs)
chr4 (225-377)||(18925723-18925875)
chr4 (19-161)||(18925557-18925696)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 4643987 - 4643673
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    ||||||||||| ||||||||||||||||||| ||||||| | ||| ||||||| || ||||| |    ||||||||||||||||||| ||| | ||||||    
T  4643987 ggacaatgattatcctcgttacttggagaaacaatatccgctaagcgtatcaaatgattatgaac---atcatctaaactatttaaaaaatgccattcca 4643891  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagttttgaaatgaaattcgagatatcaaatggttttggtgtgtcttagtagttgggaaaat 218  Q
    |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||   | ||||||||||||||||||||||| |||||||||||||||    
T  4643890 aattacactgcaccagaagctgtttatttaactgcaagaagtttagaaatgaaattattggtatcaaatggttttggtgtgtct-agtagttgggaaaat 4643792  T
Q  219 gatttcaatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtg 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||| |  ||||||||||    
T  4643791 gatttcaatgtaacttggaattttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgatccggatataacaaataaaggtg 4643692  T
Q  319 atagagtttttcagatatt 337  Q
    ||||||| |||||||||||    
T  4643691 atagagtctttcagatatt 4643673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 225 - 377
Target Start/End: Original strand, 4712056 - 4712208
Alignment:
Q  225 aatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 324  Q
    |||||||||||||||||  | ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712056 aatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 4712155  T
Q  325 tttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712156 tttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 4712208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 225 - 377
Target Start/End: Original strand, 4845996 - 4846148
Alignment:
Q  225 aatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 324  Q
    ||||||||||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4845996 aatgtaacttggaatttcgaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttaccaagaataaaggtgatagag 4846095  T
Q  325 tttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 377  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  4846096 tttttcagatatttatcaatgatattttggctgaactatatgctgatgtgatt 4846148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 4845827 - 4845969
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4845827 ggacaatgattttcctcgttacttggagaaagaatatccacttagtgtatcaagtttttatggaagtgatcatctaaactatttaaacaatactattcca 4845926  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  4845927 aattacactgcaccagaagctgtatacttaactgcaagaagtt 4845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 4711887 - 4712029
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    ||||| ||||| ||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||     
T  4711887 ggacagtgattttcctctttacctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaaactatttaaacaataccattccc 4711986  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||    
T  4711987 aattacactgcaccagaagctgtatactttactgcaagaagtt 4712029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 4663267 - 4663135
Alignment:
Q  23 aatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattccaaatt 122  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||   |||||||||||||||||||||||||| ||||||||||    
T  4663267 aatgattctcctcgttacttggagatagaatatccacaaagtgtatcaagtgattttgga---gatcatctaaactatttaaacaataccattccaaatt 4663171  T
Q  123 acactgcaccagaagctgtttacttaacttcaagaa 158  Q
    |||||||||||||| |||| ||||||||| ||||||    
T  4663170 acactgcaccagaaactgtatacttaactgcaagaa 4663135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 4631207 - 4631068
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    ||||||||||| |||||||||||||||||||||||||||||  ||||||||||||  || ||||    ||||||||||||||||||||||||| ||| ||    
T  4631207 ggacaatgattttcctcgttacttggagaaagaatatccacttagtgtatcaagttattttggac---atcatctaaactatttaaacaataccatttca 4631111  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  4631110 aattacactgcaccagaagctgtttacttaactgcgagaagtt 4631068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 4667221 - 4667079
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||  ||||||||  || ||||  |||||||| |||||||||| | ||||||||||||    
T  4667221 ggacaatgattttcctcgttacttggagaaacaatatccacaaagcatatcaagttattttggacctgatcatccaaactatttacaaaatactattcca 4667122  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||    
T  4667121 aattacactgcaccagaagttgtgtacttaactgcaagaagtt 4667079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 4697165 - 4697283
Alignment:
Q  219 gatttcaatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtg 318  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||| |||||    
T  4697165 gatttcaatgtaacttggaatttcgaagttgatgttggttttacttatatggtaaggttgcatttttgtgagtttgatcagcatatcaaaaatataggtg 4697264  T
Q  319 atagagtttttcagatatt 337  Q
    ||||||| ||||| |||||    
T  4697265 atagagtctttcaaatatt 4697283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 238 - 394
Target Start/End: Complemental strand, 4647625 - 4647471
Alignment:
Q  238 attttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatt 337  Q
    ||||||| ||||||| ||||||||||||||||||||||||||  |||||||||||||||   | ||| ||||||  |||||||| ||||||||| || ||    
T  4647625 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaattcaggtgatacagtttttcatatgtt 4647528  T
Q  338 tatcaatgatattttggctgaacaatacgctgatgtgattacatgggctggtgctcc 394  Q
    |||  ||||||||||||||||||| || |||||||||||| ||||||||||||||||    
T  4647527 tatagatgatattttggctgaacattatgctgatgtgattgcatgggctggtgctcc 4647471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 225 - 337
Target Start/End: Complemental strand, 4636971 - 4636859
Alignment:
Q  225 aatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 324  Q
    |||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||  || ||||||  |||||||||||||||    
T  4636971 aatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaactataaaggtgatagag 4636872  T
Q  325 tttttcagatatt 337  Q
    | |||||||||||    
T  4636871 tctttcagatatt 4636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 219 - 383
Target Start/End: Complemental strand, 4653640 - 4653476
Alignment:
Q  219 gatttcaatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtg 318  Q
    |||| |||||||||||||||||| || ||||| |     |||||||||||||| ||||||||||||||||| ||||||  || ||||||| |||||||||    
T  4653640 gattacaatgtaacttggaatttcgaagttgactcaacatttacttatatggtcaggttacatttttgtgaatttgattggcgtatcaaggataaaggtg 4653541  T
Q  319 atagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgattacatgg 383  Q
    |||||||||| |||||||||||  ||||| | |||||||||| | | |||||||||||| |||||    
T  4653540 atagagttttccagatatttatacatgatttcttggctgaaccaaatgctgatgtgatttcatgg 4653476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 360
Target Start/End: Complemental strand, 4667052 - 4666917
Alignment:
Q  225 aatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 324  Q
    ||||| || ||||||||| | ||||||| |  ||||||||||||||||||||| ||||||||||||||||||  || ||||||||||  |||||||||||    
T  4667052 aatgtgacatggaattttaaagttgattctatttttacttatatggtaaggttgcatttttgtgagtttgattggcatatcaagaatccaggtgatagag 4666953  T
Q  325 tttttcagatatttatcaatgatattttggctgaac 360  Q
    |||||||||| |||||  |||||||| |||||||||    
T  4666952 tttttcagatttttatagatgatattatggctgaac 4666917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 219 - 398
Target Start/End: Original strand, 4783810 - 4783989
Alignment:
Q  219 gatttcaatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtg 318  Q
    |||| ||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||  || ||||||  |  | ||||    
T  4783810 gattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtg 4783909  T
Q  319 atagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgattacatgggctggtgctcctttg 398  Q
    ||||| |||||||||| || ||  |||||| ||||||||||||    ||||||||||| |  |||  |||||||||||||    
T  4783910 atagaatttttcagattttcatagatgatagtttggctgaacatgctgctgatgtgataaggtggagtggtgctcctttg 4783989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 219 - 376
Target Start/End: Original strand, 4816239 - 4816396
Alignment:
Q  219 gatttcaatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtg 318  Q
    |||| ||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||  || ||||||  |  | ||||    
T  4816239 gattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtg 4816338  T
Q  319 atagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgat 376  Q
    ||||| |||||||||| || ||  |||||| |||||||||||  |  |||||||||||    
T  4816339 atagaatttttcagattttcatagatgatagtttggctgaactttttgctgatgtgat 4816396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 4672983 - 4672844
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    ||||||||||| || | |||||||||||||| |||||||||  |||||||||||||  |||   |   ||||||| |||| |||||||||||| ||||||    
T  4672983 ggacaatgattttcatggttacttggagaaacaatatccacttagtgtatcaagtgagtat---atgcatcatctcaactttttaaacaataccattcca 4672887  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  4672886 aattacactgcaccagaagctgtttacgtaactgcaagaagtt 4672844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 4663105 - 4662990
Alignment:
Q  225 aatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 324  Q
    |||||||||||||||||||||||||||| |  |||||| || ||||||||||||||||||||||||||||||| |  |||||  |||||||||||||||     
T  4663105 aatgtaacttggaattttgaggttgattcttcttttacatacatggtaaggttacatttttgtgagtttgatccgaatatcataaataaaggtgatagaa 4663006  T
Q  325 tttttcagatatttat 340  Q
    | |||||||| |||||    
T  4663005 tgtttcagatttttat 4662990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 4672790 - 4672675
Alignment:
Q  225 aatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 324  Q
    |||||||||||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||||   ||||||||  |||| |||||||||||    
T  4672790 aatgtaacttggaattttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttgacaggcttatcattaatacaggtgatagag 4672691  T
Q  325 tttttcagatatttat 340  Q
      |||||||| |||||    
T  4672690 cctttcagatttttat 4672675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 224 - 334
Target Start/End: Complemental strand, 4864037 - 4863927
Alignment:
Q  224 caatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgataga 323  Q
    ||||||||||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||| |  ||| |  |||||||||||||||    
T  4864037 caatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgatccgaatataacaaataaaggtgataga 4863938  T
Q  324 gtttttcagat 334  Q
    |  ||||||||    
T  4863937 gcctttcagat 4863927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 4697005 - 4697143
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||  ||||||||| || |  |    ||||||| ||||||  |||||| || |||| |    
T  4697005 ggacaatgattttcctcgttacttggagaaacaatatccacaaagcatatcaagtgattttaaac---atcatcttaactatgaaaacaacaccattcaa 4697101  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagt 160  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  4697102 aattacactgcaccagaagctgtgtacttaactgcaagaagt 4697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 4864202 - 4864063
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||  ||||||||| || |   |   ||||||| ||||||  |||||| || |||| |    
T  4864202 ggacaatgattttcctcgttacttggagaaacaatatccacaaagcatatcaagtgatttt---aaacatcatcttaactatgaaaacaacaccattcaa 4864106  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||    
T  4864105 aattacactgcaccagaagttgtgtacttaactgcaagaagtt 4864063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 4653793 - 4653651
Alignment:
Q  26 gattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattccaaattaca 125  Q
    |||| |||||||||||| |||||| ||||||||| |||||||||||||| || || ||   ||||||| ||||||  ||||||||| |||||||||||||    
T  4653793 gattatcctcgttacttagagaaacaatatccactaagtgtatcaagtgattttgtaa---atcatctcaactataaaaacaatacaattccaaattaca 4653697  T
Q  126 ctgcaccagaagctgtttacttaacttcaagaagttttgaaatgaa 171  Q
      |||||||||||||| ||| ||||| | ||||||| || ||||||    
T  4653696 tcgcaccagaagctgtatacctaactgcgagaagttatggaatgaa 4653651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 4631047 - 4630971
Alignment:
Q  219 gatttcaatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttga 295  Q
    |||| ||||||||||||||||||||| ||||||| |  |||||||||||||||||| ||||||||||||||||||||    
T  4631047 gattacaatgtaacttggaattttgaagttgattcttcttttacttatatggtaagattacatttttgtgagtttga 4630971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 4783741 - 4783789
Alignment:
Q  113 attccaaattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  4783741 attccaaattacattgcaccagaaggtgtttacttaactgcaagaagtt 4783789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 4816170 - 4816218
Alignment:
Q  113 attccaaattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  4816170 attccaaattacattgcaccagaaggtgtttacttaactgcaagaagtt 4816218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 4783650 - 4783705
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtg 74  Q
    ||||||||||||||||||||||||||||||||| || |||   |||||||||||||    
T  4783650 ggacaatgattctcctcgttacttggagaaagagtacccatctagtgtatcaagtg 4783705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 4816079 - 4816134
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtg 74  Q
    ||||||||||||||||||||||||||||||||| || |||   |||||||||||||    
T  4816079 ggacaatgattctcctcgttacttggagaaagagtacccatctagtgtatcaagtg 4816134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 4637046 - 4636998
Alignment:
Q  113 attccaaattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    ||||||||||||| ||||||||||| ||| ||||||||| |||||||||    
T  4637046 attccaaattacattgcaccagaagttgtgtacttaactgcaagaagtt 4636998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 225 - 377
Target Start/End: Original strand, 18925723 - 18925875
Alignment:
Q  225 aatgtaacttggaattttgaggttgattttggttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 324  Q
    |||||||||||||||||||| ||||||| ||  ||||||||| ||||||| || |||||||| |||||||||  || ||| |||||| ||||||||||||    
T  18925723 aatgtaacttggaattttgaagttgattctgcctttacttatttggtaagattgcatttttgcgagtttgattggcatataaagaatcaaggtgatagag 18925822  T
Q  325 tttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 377  Q
    |||||||||| |||||  |||||| ||||||||||| | | ||||||||||||    
T  18925823 tttttcagatttttatagatgataatttggctgaacgaaatgctgatgtgatt 18925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 18925557 - 18925696
Alignment:
Q  19 ggacaatgattctcctcgttacttggagaaagaatatccacaaagtgtatcaagtgtttatggaagtgatcatctaaactatttaaacaatactattcca 118  Q
    |||||| |||| ||||||||||||||||||| ||||||||| ||||||||||| || || |   |   || |||| |||||| |||||||||| ||||||    
T  18925557 ggacaacgattttcctcgttacttggagaaacaatatccactaagtgtatcaaatgatttt---acacataatctcaactatataaacaataccattcca 18925653  T
Q  119 aattacactgcaccagaagctgtttacttaacttcaagaagtt 161  Q
    || ||||| |||||||||| ||| ||||||||| |||||||||    
T  18925654 aactacacggcaccagaagttgtatacttaactgcaagaagtt 18925696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University