View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4149_high_10 (Length: 288)
Name: NF4149_high_10
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 52082286 - 52082546
Alignment:
| Q |
18 |
gtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaataaaggtttccacttgtcgtcactag |
117 |
Q |
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| T |
52082286 |
gtgatgaagataacatttcaaataatagttttatcactttcagaatactagaaaacaaggcatccaaggttcaataaaggtttccacttgtcgtcactag |
52082385 |
T |
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| Q |
118 |
gacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatccca |
217 |
Q |
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| T |
52082386 |
gacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatccca |
52082485 |
T |
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| Q |
218 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtg |
278 |
Q |
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| T |
52082486 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctctgtg |
52082546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 52092482 - 52092742
Alignment:
| Q |
18 |
gtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaataaaggtttccacttgtcgtcactag |
117 |
Q |
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| T |
52092482 |
gtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggttcaataaaggtttccacttgtcgtcact-- |
52092579 |
T |
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| Q |
118 |
gacaaaaatgagagggagccataat----ttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaat |
213 |
Q |
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| T |
52092580 |
-acaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaacacacacctcacgacaac |
52092678 |
T |
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| Q |
214 |
cccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtg |
278 |
Q |
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| T |
52092679 |
ctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctctgtg |
52092742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 35901836 - 35901779
Alignment:
| Q |
218 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
275 |
Q |
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| T |
35901836 |
caaatttatctctctcagttgtgtacagttttctatgacttgtctcactcctttctct |
35901779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 1754287 - 1754484
Alignment:
| Q |
81 |
ccatggttcaataaaggtttccacttgtcgtcactaggacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatcc |
180 |
Q |
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||||| |||||||| |||||||||||| ||||||||| ||||| || ||||| | | || |||||||| ||| |||| | | ||||||||| ||| |
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| T |
1754287 |
ccatgattcaataagggtttccacttgctatcactaggataaaaaccagggggagtcttgatctttctcaacaatggccttgacaataccatcacattcc |
1754386 |
T |
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| Q |
181 |
agaaattaacatcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtg |
278 |
Q |
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| T |
1754387 |
ataaatcaacatcaacggccacattgacataatgtcgcaaacttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctctgtg |
1754484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 1528397 - 1528338
Alignment:
| Q |
218 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgt |
277 |
Q |
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| T |
1528397 |
caaatttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctctgt |
1528338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 6006218 - 6006292
Alignment:
| Q |
204 |
ttatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgtg |
278 |
Q |
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| T |
6006218 |
ttatgacaatcctgcaaatttatctctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtg |
6006292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 12120336 - 12120301
Alignment:
| Q |
218 |
caaatttatctctctcagtcgtgtgcagttttctac |
253 |
Q |
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| T |
12120336 |
caaatttatctctctcagttgtgtgcagttttctac |
12120301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 12845480 - 12845557
Alignment:
| Q |
200 |
cacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctctgt |
277 |
Q |
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| T |
12845480 |
cacattttgacaatccctcaaattgatctctctcaactttgtgcattttgctaccacttgcctcactcccttctctgt |
12845557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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