View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4149_high_12 (Length: 271)
Name: NF4149_high_12
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 34584848 - 34585089
Alignment:
| Q |
14 |
agatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatca |
113 |
Q |
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| T |
34584848 |
agatgcaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatca |
34584947 |
T |
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| Q |
114 |
gatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacc |
213 |
Q |
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| T |
34584948 |
gatcaatatttttcaacaatttttggcatcatactcagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacc |
34585047 |
T |
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| Q |
214 |
tcgacgcattttttacctaggtttatgttgtgacttgtgagt |
255 |
Q |
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| T |
34585048 |
tcgacgcattttttacctaggtttatgttgtgacttgtgagt |
34585089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 34586493 - 34586641
Alignment:
| Q |
56 |
ctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaaga |
155 |
Q |
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| T |
34586493 |
ctaattaatattgtgaatggatatgaaaatgtgttctcaactgaatcgatagttatcaaatcattatgt----acagttgttggtatcctactaaga--- |
34586585 |
T |
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| Q |
156 |
tggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgata |
211 |
Q |
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| T |
34586586 |
tgtaagaaaattacttcatgagcatgagtcaacattgttacaatacaagcatgata |
34586641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 34582916 - 34583022
Alignment:
| Q |
73 |
tggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttc |
172 |
Q |
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| T |
34582916 |
tggatatgaaaatgtgttctcaactaaatcaatagttatcagatcaatatttttgtacaaattttgtcatcatact---aagatgtaagaaaattaattc |
34583012 |
T |
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| Q |
173 |
atgagcatga |
182 |
Q |
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| T |
34583013 |
acgagcatga |
34583022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 27016162 - 27015925
Alignment:
| Q |
15 |
gatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatcag |
114 |
Q |
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|||| |||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| | |
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| T |
27016162 |
gatgcaaatgttgttcttgatcttgacttgcaataatcaacccaattaatgttgtgaatg--tatgaaaatctgttttcaacttaatcaatagtaattaa |
27016065 |
T |
|
| Q |
115 |
atcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacct |
214 |
Q |
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| T |
27016064 |
atcaatatttttgtacaatttt-ggcatcatactaagaagatggaaggaaattacttcatgagcaattgtcaacatcgttacagtacaagcatgatacct |
27015966 |
T |
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| Q |
215 |
cgacgcattttttacctaggtttatgttgtgacttgtgagt |
255 |
Q |
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| T |
27015965 |
tgatgcattttttacttaggtttatgttgtgacttgtgagt |
27015925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 51201168 - 51201289
Alignment:
| Q |
59 |
attaatattgtgaatggatatgaaaatttgttttcaacttaatc-aatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatg |
157 |
Q |
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||||||||||| |||| || ||||||| ||||||||| |||||| |||||||||||||| ||||||||| | |||||||||| |||||||| |||||| |
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| T |
51201168 |
attaatattgtaaatgaatctgaaaatgtgttttcaaattaatccaatagtaatcagataaatatttttgttcaatttttggcatcatact---aagatg |
51201264 |
T |
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| Q |
158 |
gaagaaaattacttcatgagcatga |
182 |
Q |
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| T |
51201265 |
taagaaaattacttcatgatcatga |
51201289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 5327851 - 5327807
Alignment:
| Q |
183 |
gtcaacatcgttacagtacaagcatgatacctcgacgcatttttt |
227 |
Q |
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| T |
5327851 |
gtcaacatcgttatagtacaagcatgataccttgatgcatttttt |
5327807 |
T |
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