View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4149_high_13 (Length: 250)
Name: NF4149_high_13
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_high_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 39460048 - 39460290
Alignment:
| Q |
8 |
agattatactatcagtttgagtttgagccactgcagctggaaatccccatgtgttcattttgacctcttgattaatgatgcaattacaaagtaacagtca |
107 |
Q |
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| T |
39460048 |
agatcatactatcagtttgagtttgagccactgcagctggaaatccccatgtgttcattttgacctcttgattaatgatgcaattacaaagtaacagtca |
39460147 |
T |
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| Q |
108 |
atagctactcattacacatgtgatttagttgctttaagaatgcctctaaatttatgttccttaagtttttgtttttggcttttagactggttaattcact |
207 |
Q |
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| T |
39460148 |
atagctactcattacacatgtgatttagttgctttaagaatgcctctaaatttatgttccttaagtttttgtttttggcttttagactggttaattcact |
39460247 |
T |
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| Q |
208 |
ctggacagacataatgcacagttgcccatcatgagttctgttt |
250 |
Q |
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| T |
39460248 |
ctggacagacagaatgcacagttgcccatcatgagttctgttt |
39460290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 39481685 - 39481554
Alignment:
| Q |
125 |
atgtgatttagttgctttaagaatgcctctaaatttatgttcc------ttaagtttttgtttttggcttttagactggttaattcactctggacagaca |
218 |
Q |
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| T |
39481685 |
atgtggtttagttgctttaagaatgcctctaattttatgttccgcaacattttggttttggttttggtttttacaatggttaactcactctagacagatt |
39481586 |
T |
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| Q |
219 |
taatgcacagttgcccatcatgagttctgttt |
250 |
Q |
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| T |
39481585 |
taaggcacagttgcacaacatcagttctgttt |
39481554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 39158067 - 39158143
Alignment:
| Q |
125 |
atgtgatttagttgctttaagaatgcctctaaatttatgttccttaagtttttgtttttggcttttagactggttaa |
201 |
Q |
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| T |
39158067 |
atgtggtttagttgctttaagaatgcctctaattttatgttctgcaacattttggttttggtttttagaatggttaa |
39158143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 19810409 - 19810517
Alignment:
| Q |
131 |
tttagttgctttaagaatgcctctaaatttatgttccttaagtttttgtttttggcttttagactggttaattcactctggacagacataatgcacagtt |
230 |
Q |
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| T |
19810409 |
tttagttgctttaagaatgcctctaagtttatgttcagcaactttttggttttgg-ttttagaatggttaactcactctagacagatttaatgcacggtt |
19810507 |
T |
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| Q |
231 |
gcccatcatg |
240 |
Q |
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| T |
19810508 |
gcacatcatg |
19810517 |
T |
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