View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4149_high_3 (Length: 458)

Name: NF4149_high_3
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4149_high_3
NF4149_high_3
[»] chr3 (11 HSPs)
chr3 (164-439)||(21099925-21100201)
chr3 (1-161)||(21100172-21100332)
chr3 (189-341)||(48432368-48432521)
chr3 (189-341)||(48435810-48435963)
chr3 (1-72)||(19187260-19187331)
chr3 (3-71)||(5941208-5941276)
chr3 (198-330)||(4662155-4662288)
chr3 (1-66)||(17793822-17793887)
chr3 (1-66)||(19102262-19102327)
chr3 (190-253)||(1702079-1702142)
chr3 (72-140)||(48432198-48432266)
[»] chr4 (9 HSPs)
chr4 (189-360)||(33722902-33723075)
chr4 (1-58)||(17339455-17339512)
chr4 (189-324)||(15020448-15020584)
chr4 (1-72)||(12138448-12138519)
chr4 (1-71)||(16282538-16282608)
chr4 (1-71)||(18218030-18218100)
chr4 (161-254)||(39991832-39991924)
chr4 (295-336)||(39991967-39992008)
chr4 (282-330)||(16596010-16596058)
[»] chr2 (3 HSPs)
chr2 (189-360)||(14104530-14104703)
chr2 (23-71)||(44583572-44583620)
chr2 (1-71)||(24788976-24789046)
[»] chr7 (7 HSPs)
chr7 (23-71)||(13474705-13474753)
chr7 (23-71)||(22611236-22611284)
chr7 (221-324)||(29478169-29478273)
chr7 (1-71)||(11658087-11658157)
chr7 (292-341)||(6898442-6898492)
chr7 (292-360)||(4339880-4339951)
chr7 (285-360)||(4346407-4346485)
[»] chr1 (9 HSPs)
chr1 (189-336)||(36724674-36724821)
chr1 (189-341)||(24159781-24159934)
chr1 (189-336)||(12906120-12906266)
chr1 (189-341)||(32987200-32987353)
chr1 (190-360)||(33380904-33381078)
chr1 (189-254)||(27761821-27761886)
chr1 (207-360)||(23193223-23193379)
chr1 (282-336)||(31063921-31063975)
chr1 (207-279)||(47451225-47451298)
[»] chr5 (5 HSPs)
chr5 (179-324)||(18265477-18265623)
chr5 (207-341)||(1286266-1286400)
chr5 (1-61)||(14138418-14138478)
chr5 (220-327)||(25215239-25215347)
chr5 (220-327)||(25279390-25279498)
[»] chr8 (4 HSPs)
chr8 (189-357)||(4544233-4544405)
chr8 (223-324)||(19949795-19949897)
chr8 (72-135)||(19954407-19954470)
chr8 (23-71)||(29309203-29309251)
[»] chr6 (3 HSPs)
chr6 (189-360)||(35129568-35129741)
chr6 (111-161)||(12714162-12714212)
chr6 (161-254)||(32551473-32551566)
[»] scaffold0018 (1 HSPs)
scaffold0018 (223-319)||(171731-171828)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 164 - 439
Target Start/End: Complemental strand, 21100201 - 21099925
Alignment:
Q  164 gatcttacaacacagtaagactccaatacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcatttt 263  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  21100201 gatcttacaacacagtaagactccgatacaattgtagctagactgttttatcttgggggcgtcatggttaatagtctgtttgcacaatttttggcatttt 21100102  T
Q  264 catgaaaagtcttaaaatagcgacataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaacttttttaactattg-ttccaaga 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  21100101 catgaaaagtcttaaaatagcgacataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaacttttttaactattgtttccaaca 21100002  T
Q  363 agtgcaaactaaaaaggttactaatactgaaaaagaaaaactagcaaggcggttgagactgttgcggaatcgctggg 439  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21100001 agtgcaaactaaaaaggttacgaatactgaaaaagaaaaactagcaaggcggttgagactgttgcggaatcgctggg 21099925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 21100332 - 21100172
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgctacaggtatcaataccatattggagtgaccttg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  21100332 ataatatttatcaaaattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgttacatgtatcaataccatattggagtgaccttg 21100233  T
Q  101 acaccacatataaaggtgtatttctagaacggatcttacaacacagtaatactccgataca 161  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  21100232 acaccacatatgaaggtgtatttctagaacagatcttacaacacagtaagactccgataca 21100172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 48432521 - 48432368
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    ||||| |||||||||| |||||||||||| | | |||| ||||| ||||||||||| ||||||||| |||| |  ||  ||| |||||||| | ||||||    
T  48432521 atacagttgtagctaggctgttttatcttggggacgtcgtggttgatagtctgttttcacaattttgggcagtgccacaaaacgtcttaaagagagcgac 48432422  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaact 341  Q
     || ||||||||||||||||||| |||||||||||||  ||| |||||| ||||    
T  48432421 ctagtccgcgactcagcctagtaatctcttcggtgacagaaagtatttttaact 48432368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 341
Target Start/End: Original strand, 48435810 - 48435963
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    ||||||||||||||   |||||||||| | | | |||| ||||| |||||||| |||||| |||||   || | ||| |||| |||||||| | ||||||    
T  48435810 atacaattgtagctgagctgttttatcctggggacgtcgtggttgatagtctgcttgcactattttgaacagtgtcacgaaacgtcttaaagagagcgac 48435909  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaact 341  Q
     || ||||||||||||||||||| |||||||||||||  |||||||||| ||||    
T  48435910 ctagtccgcgactcagcctagtaatctcttcggtgacggaaaatatttttaact 48435963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19187260 - 19187331
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgctacag 72  Q
    |||||||| ||||| | ||| |||||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  19187260 ataatattaatcaaaactccacctattaaacatcattgaattatttaaaaatagaaaatgagggtgttacag 19187331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 5941276 - 5941208
Alignment:
Q  3 aatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||| ||||| | ||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||||    
T  5941276 aatattaatcaaaactccacctattaaatatcattgaattaactaaaaatagaaaattagggtgttaca 5941208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 330
Target Start/End: Complemental strand, 4662288 - 4662155
Alignment:
Q  198 tagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtctta-aaatagcgacataatccgc 296  Q
    ||||| |||||||||||| | | | |||||||||| |||||||| ||||| |||||| ||||||| ||  ||| |||||| | | |||||| || ||| |    
T  4662288 tagctggactgttttatcctggggacgtcatggttgatagtctgcttgcataattttgggcatttccactaaacgtcttagagagagcgacctagtccac 4662189  T
Q  297 gactcagcctagtagtctcttcggtgaccaaaaa 330  Q
    |||||||| | ||| ||||||||||||| |||||    
T  4662188 gactcagcgtggtaatctcttcggtgacaaaaaa 4662155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17793822 - 17793887
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtg 66  Q
    |||||||| ||||| | ||| ||||||| |||||||||| |||| |||||||||||||||||||||    
T  17793822 ataatattaatcaaaactccacctattagacatcattgatttaactaaaaatagaaaattagggtg 17793887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19102262 - 19102327
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtg 66  Q
    |||||||| ||||| | ||| ||||||| |||||||||| |||| |||||||||||||||||||||    
T  19102262 ataatattaatcaaaactccacctattagacatcattgatttaactaaaaatagaaaattagggtg 19102327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 1702079 - 1702142
Alignment:
Q  190 tacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattt 253  Q
    |||| |||||||||||||||||||| || ||| | ||||||||||||||||| ||||| |||||    
T  1702079 tacagttgtagctagactgttttattttagagacatcatggttaatagtctgcttgcaaaattt 1702142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 48432198 - 48432266
Alignment:
Q  72 ggtatcaataccatattggagtgaccttgacaccacatataaaggtgtatttctagaacggatcttaca 140  Q
    ||||||||||||||||| |||||  ||| |||||| || | |||||||||||||||||| |||| ||||    
T  48432198 ggtatcaataccatattagagtggtcttaacaccatatttgaaggtgtatttctagaacagatcctaca 48432266  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 360
Target Start/End: Original strand, 33722902 - 33723075
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    ||||| |||||||| | |||||||||| | | | |||| ||||  || ||||| |||||||||||| | || | ||| |||| |||||||| | || |||    
T  33722902 atacagttgtagctgggctgttttatcctggggacgtcgtggtcgatggtctgcttgcacaattttggacagtgtcacgaaacgtcttaaagagagtgac 33723001  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaact-tttttaactattgttccaa 360  Q
     || ||||||||||||||||||| |||||||||||||  |||||||||| ||||  |||| |||||||||||||    
T  33723002 ctagtccgcgactcagcctagtaatctcttcggtgacagaaaatatttttaactaattttgactattgttccaa 33723075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17339455 - 17339512
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaa 58  Q
    |||||||| ||||| | | | |||||||||||||||||||||||||||||||||||||    
T  17339455 ataatattaatcaaaacttcacctattaaacatcattgaattaattaaaaatagaaaa 17339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 324
Target Start/End: Original strand, 15020448 - 15020584
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    |||||||||||| |   |||||||||| | |  ||||| ||||| ||||||||||||||||||||| || | | ||| |||| || ||||| | ||| ||    
T  15020448 atacaattgtagttgtgctgttttatcctgggagcgtcgtggttgatagtctgtttgcacaattttgggaagtgtcacgaaacgttttaaagagagcaac 15020547  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgac 324  Q
     || || |||| |||||||||||| ||||||||||||    
T  15020548 ctagtctgcgattcagcctagtagactcttcggtgac 15020584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12138448 - 12138519
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgctacag 72  Q
    |||||||| ||||| | | | ||||||||| ||||||||||||||||||||| |||| || ||||| |||||    
T  12138448 ataatattaatcaaaacttcacctattaaatatcattgaattaattaaaaattgaaagttggggtgttacag 12138519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16282608 - 16282538
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||||| ||||| | ||| ||||||||||||| | ||||||||| |||||| |||||| ||||| ||||    
T  16282608 ataatattaatcaaaactccacctattaaacatcgtagaattaattcaaaatataaaattggggtgttaca 16282538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 18218100 - 18218030
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||| | ||||| | ||| ||||||||| ||| | ||||||||||||||||||||||| ||||| ||||    
T  18218100 ataataataatcaaaactccacctattaaaaatcgtagaattaattaaaaatagaaaattggggtgttaca 18218030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 39991832 - 39991924
Alignment:
Q  161 acggatcttacaacacagtaagactccaatacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaatttt 254  Q
    ||||||| |||||  ||||||||||  |||||| |||||| |  ||||||| ||||| |||||||| | ||| |||||||| ||||||||||||    
T  39991832 acggatcctacaatgcagtaagactataatacagttgtagttgtactgttt-atcttggaggcgtcgtagtttatagtctgattgcacaatttt 39991924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 39991967 - 39992008
Alignment:
Q  295 gcgactcagcctagtagtctcttcggtgaccaaaaatatttt 336  Q
    |||||||| ||||||| |||||| ||||||||||||||||||    
T  39991967 gcgactcaacctagtaatctctttggtgaccaaaaatatttt 39992008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 16596010 - 16596058
Alignment:
Q  282 agcgacataatccgcgactcagcctagtagtctcttcggtgaccaaaaa 330  Q
    |||||| ||||||||||||||||||| || ||||||| ||||| |||||    
T  16596010 agcgacctaatccgcgactcagcctaataatctcttcagtgacaaaaaa 16596058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 360
Target Start/End: Complemental strand, 14104703 - 14104530
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    ||||| |||||||||| |||||||||| | | | |||| ||||| ||||| |||||||||||||||  ||| |  || |||| |||||||| | ||||||    
T  14104703 atacagttgtagctaggctgttttatcatggggacgtcgtggttgatagtttgtttgcacaattttgagcagtgacacgaaacgtcttaaagagagcgac 14104604  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaact-tttttaactattgttccaa 360  Q
     || ||||||||||||||||||| | | |||| ||||  |||||||||| ||||  |||| |||||||||||||    
T  14104603 ctagtccgcgactcagcctagtaatttgttcgatgacagaaaatatttttaactaattttgactattgttccaa 14104530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 44583620 - 44583572
Alignment:
Q  23 ctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44583620 ctattaaacatcattgaattaattaaaaatagaaaattagggtgttaca 44583572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 24788976 - 24789046
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||||| ||||| | ||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  24788976 ataatattaatcaaaactccacctattaaacatcattgaattaattaaaaataaaaaattggggtgttaca 24789046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 13474753 - 13474705
Alignment:
Q  23 ctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13474753 ctattaaacatcattgaattaattaaaaatagaaaattagggtgttaca 13474705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 22611284 - 22611236
Alignment:
Q  23 ctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22611284 ctattaaacatcattgaattaattaaaaatagaaaattagggtgttaca 22611236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 324
Target Start/End: Original strand, 29478169 - 29478273
Alignment:
Q  221 ggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtctt-aaaatagcgacataatccgcgactcagcctagtagtctcttcg 319  Q
    |||||||||||| ||||||||||||||||||||| |||| |  || |||| ||||| || | |||||| || ||| ||||||||||||||||||||||||    
T  29478169 ggcgtcatggttgatagtctgtttgcacaattttgggcagtgccacgaaacgtcttgaagagagcgacttagtccacgactcagcctagtagtctcttcg 29478268  T
Q  320 gtgac 324  Q
     ||||    
T  29478269 atgac 29478273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 11658087 - 11658157
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||||| ||||| | |||  ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  11658087 ataatattaatcaaaactccagctattaaacatcattgaattaattaaaaatagaaaattaaggtgttaca 11658157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 6898442 - 6898492
Alignment:
Q  292 tccgcgactcagcctagtagtctcttcggtgac-caaaaatattttcaact 341  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||| ||||    
T  6898442 tccgcgactcagcctagtaatctcttcggtgacagaaaaatatttttaact 6898492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 4339880 - 4339951
Alignment:
Q  292 tccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaac---ttttttaactattgttccaa 360  Q
    |||||||||||||||| || | |||||  | ||||||||||||||||||   |||||| |||||||||||||    
T  4339880 tccgcgactcagcctaataatatcttcaataaccaaaaatattttcaactattttttttactattgttccaa 4339951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 4346407 - 4346485
Alignment:
Q  285 gacataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaac---ttttttaactattgttccaa 360  Q
    |||||| |||||||||| ||||| || | |||||  | ||||||||||||||||||   |||||| |||||||||||||    
T  4346407 gacatagtccgcgactcggcctaataatatcttcaataaccaaaaatattttcaactattttttttactattgttccaa 4346485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 36724821 - 36724674
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    |||||||| ||||| | |||||||||||| | |||||| ||||| || ||||| |||||||||||| || | |  ||| ||| |||||||| | ||||||    
T  36724821 atacaattatagctgggctgttttatcttgggggcgtcgtggttgattgtctgcttgcacaattttgggtagtgccataaaacgtcttaaagagagcgac 36724722  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatatttt 336  Q
     || |||  |||||||||||||| |||||||||||| ||||||||||||    
T  36724721 ctagtccatgactcagcctagtaatctcttcggtga-caaaaatatttt 36724674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 341
Target Start/End: Original strand, 24159781 - 24159934
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    ||||| ||||||||   |||||||||| | | | |||| | ||| |||||||| |||||||||||| |||| | | | |||| |||||||| | ||||||    
T  24159781 atacagttgtagctgagctgttttatcctggggacgtcgtcgttgatagtctgcttgcacaattttgggcagtattacgaaacgtcttaaagagagcgac 24159880  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaact 341  Q
     || ||||||||||||||||||| ||||||||||||   |||||||||| ||||    
T  24159881 ctagtccgcgactcagcctagtaatctcttcggtgatagaaaatatttttaact 24159934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 12906266 - 12906120
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    ||||||||||| || | |||||||||| | | |||||| ||||| |||||||| |||||||||||| |||| |  || |||| |||||||| | ||||||    
T  12906266 atacaattgtaacttggctgttttatcctgg-ggcgtcgtggttgatagtctgcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgac 12906168  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatatttt 336  Q
     || | ||||||| ||||||||| |||||||||| | ||||||||||||    
T  12906167 ctagttcgcgactaagcctagtaatctcttcggt-aacaaaaatatttt 12906120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 32987353 - 32987200
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    |||||||||||| | ||||||||| || | | ||||||||| || |||||||| |||||||||||| |||| |  ||  |||  ||||||| | || |||    
T  32987353 atacaattgtagttggactgttttctcctaggggcgtcatgattgatagtctgcttgcacaattttaggcagtgccacaaaacatcttaaagagagtgac 32987254  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaact 341  Q
     || ||||||||||||| ||||| |||||||| |||| |||| |||||| ||||    
T  32987253 ctagtccgcgactcagcttagtaatctcttcgatgacaaaaactatttttaact 32987200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 360
Target Start/End: Original strand, 33380904 - 33381078
Alignment:
Q  190 tacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgaca 288  Q
    |||| |||||||| | |||||||||||| | | |||| ||||| |||||||| ||||||||||||  ||| | ||| |||| |||||||| | ||||||     
T  33380904 tacagttgtagctgggctgttttatcttggggacgtcgtggttgatagtctgcttgcacaattttgagcagtgtcacgaaacgtcttaaagagagcgacc 33381003  T
Q  289 taatccgcgactcagcctagtagtctcttcggtg--accaaaaatattttcaact-tttttaactattgttccaa 360  Q
    || | | ||||||||||||||| ||| ||| |||  |  ||||||||||| ||||  |||| |||||||||||||    
T  33381004 tagtacacgactcagcctagtaatcttttctgtgataaaaaaaatatttttaactaattttgactattgttccaa 33381078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 27761821 - 27761886
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaatttt 254  Q
    |||||||||||||| |||||||||||| | | | |||| ||||| |||||||| ||||||||||||    
T  27761821 atacaattgtagctggactgttttatcctggggacgtcgtggttgatagtctgcttgcacaatttt 27761886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 23193223 - 23193379
Alignment:
Q  207 tgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgacataatccgcgactcagcc 305  Q
    ||||||||| | | |||||| ||||| |||||||| ||||| |||||| ||   |  ||||||| |||||| | | |||||| || |||||||||||||     
T  23193223 tgttttatcatgggggcgtcgtggttgatagtctgcttgcataattttgggttgtgccatgaaacgtcttatagagagcgacctagtccgcgactcagcg 23193322  T
Q  306 tagtagtctcttcggtgac-caaaaatattttcaact-tttttaactattgttccaa 360  Q
    ||||| |||||||| ||||  ||||||||||| ||||  |||| |||||||||||||    
T  23193323 tagtaatctcttcgatgacagaaaaatatttttaactaattttgactattgttccaa 23193379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 31063975 - 31063921
Alignment:
Q  282 agcgacataatccgcgactcagcctagtagtctcttcggtgaccaaaaatatttt 336  Q
    |||||| || ||| ||||||||||||||| ||||||||||||| | |||||||||    
T  31063975 agcgacctagtccacgactcagcctagtaatctcttcggtgacaagaaatatttt 31063921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 47451225 - 47451298
Alignment:
Q  207 tgttttatcttcgaggcgtcatggttaatagtctgt-ttgcacaattttcggcattttcatgaaaagtcttaaa 279  Q
    ||||||||||| |||||| | ||||| ||||||||| |||||||||||| |||| |  ||||||| ||||||||    
T  47451225 tgttttatcttggaggcggcgtggttgatagtctgtcttgcacaatttttggcagtgccatgaaacgtcttaaa 47451298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 324
Target Start/End: Original strand, 18265477 - 18265623
Alignment:
Q  179 taagactccaatacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaa 278  Q
    ||||||||  ||||| ||||||||   |||||||||| | | | |||| ||||| |||||||| |||||||||||| |||| | |||  ||| |||||||    
T  18265477 taagactctgatacagttgtagctgagctgttttatcatggggacgtcgtggttgatagtctgattgcacaattttaggcagtgtcacaaaacgtcttaa 18265576  T
Q  279 a-atagcgacataatccgcgactcagcctagtagtctcttcggtgac 324  Q
    | | |||||| || ||||| ||||||||||||| |||||||||||||    
T  18265577 agagagcgacctagtccgctactcagcctagtaatctcttcggtgac 18265623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 1286266 - 1286400
Alignment:
Q  207 tgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgacataatccgcgactcagcc 305  Q
    ||||||||| | ||| |||| ||||||||| |||  ||||||||||||||||| |  ||  ||| |||||||| | |||| |||| ||||||||||||||    
T  1286266 tgttttatcatggagacgtcgtggttaataatctagttgcacaattttcggcaatgccac-aaatgtcttaaagagagcggcatagtccgcgactcagcc 1286364  T
Q  306 tagtagtctcttcggtgaccaaaaatattttcaact 341  Q
    ||||| ||||| |||||||  |||||||||| ||||    
T  1286365 tagtaatctctccggtgacagaaaatatttttaact 1286400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14138418 - 14138478
Alignment:
Q  1 ataatatttatcaatattccgcctattaaacatcattgaattaattaaaaatagaaaatta 61  Q
    |||||||| ||||| | | | |||||||||||||||||||||||||||||||| |||||||    
T  14138418 ataatattaatcaaaacttcacctattaaacatcattgaattaattaaaaatataaaatta 14138478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 25215239 - 25215347
Alignment:
Q  220 aggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgacataatccgcgactcagcctagtagtctcttc 318  Q
    ||||||||||||| ||||| |  |||||||||||| |||| | |||| ||| |||||||| | |||||| || || ||||||||||| | || |||||||    
T  25215239 aggcgtcatggttgatagtatacttgcacaattttaggcaatgtcataaaatgtcttaaagagagcgacctagtctgcgactcagccaaataatctcttc 25215338  T
Q  319 ggtgaccaa 327  Q
    |||||||||    
T  25215339 ggtgaccaa 25215347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 25279390 - 25279498
Alignment:
Q  220 aggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgacataatccgcgactcagcctagtagtctcttc 318  Q
    ||||||||||||| ||||| |  |||||||||||| |||| | |||| ||| |||||||| | |||||| || || ||||||||||| | || |||||||    
T  25279390 aggcgtcatggttgatagtatacttgcacaattttaggcaatgtcataaaatgtcttaaagagagcgacctagtctgcgactcagccaaataatctcttc 25279489  T
Q  319 ggtgaccaa 327  Q
    |||||||||    
T  25279490 ggtgaccaa 25279498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 357
Target Start/End: Original strand, 4544233 - 4544405
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    ||||| |||||||| |||||||||||| | | | |||  ||||| |||||||  ||||||||||||  ||| |  ||||||| |||||||| | ||||||    
T  4544233 atacagttgtagctggactgttttatcctagggacgtagtggttgatagtctacttgcacaattttgagcagtgccatgaaacgtcttaaagagagcgac 4544332  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgac--caaaaatattttcaact-tttttaactattgttc 357  Q
     || |||| |||||||||||||| |||||||||||||   ||||||||||| ||||  |||| ||||||||||    
T  4544333 ctagtccgtgactcagcctagtaatctcttcggtgactgaaaaaatatttttaactaattttgactattgttc 4544405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 324
Target Start/End: Complemental strand, 19949897 - 19949795
Alignment:
Q  223 cgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgacataatccgcgactcagcctagtagtctcttcggt 321  Q
    |||||||||| |||||||| |||| ||||||| |||| |  || ||||  ||||||| | |||||| || |||| |||||||||||||| ||||||||||    
T  19949897 cgtcatggttgatagtctgcttgctcaattttgggcagtgccacgaaacttcttaaagagagcgacgtagtccgtgactcagcctagtaatctcttcggt 19949798  T
Q  322 gac 324  Q
    |||    
T  19949797 gac 19949795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 19954470 - 19954407
Alignment:
Q  72 ggtatcaataccatattggagtgaccttgacaccacatataaaggtgtatttctagaacggatc 135  Q
    |||||||||||||||||||||||| |||  ||||| ||   |||||||||||||||||| ||||    
T  19954470 ggtatcaataccatattggagtgatcttagcaccatattggaaggtgtatttctagaacagatc 19954407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 29309203 - 29309251
Alignment:
Q  23 ctattaaacatcattgaattaattaaaaatagaaaattagggtgctaca 71  Q
    |||||||| ||||||||||||||||||||| |||| || ||||| ||||    
T  29309203 ctattaaatatcattgaattaattaaaaattgaaagttggggtgttaca 29309251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 360
Target Start/End: Complemental strand, 35129741 - 35129568
Alignment:
Q  189 atacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgac 287  Q
    ||||| |||||||| |||||||||||| |   |  ||| ||||| |||||||| |||||||||||| |||| |  ||||||| |||||||| | ||||||    
T  35129741 atacagttgtagctggactgttttatcctgatgatgtcgtggttgatagtctgcttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgac 35129642  T
Q  288 ataatccgcgactcagcctagtagtctcttcggtgaccaaaaatattttcaact-tttttaactattgttccaa 360  Q
     || || |||||||||  ||||| ||| |||| ||||  |||||||||| ||||  |||| |||||||||||||    
T  35129641 ctagtctgcgactcagtatagtaatcttttcgatgacggaaaatatttttaactaattttgactattgttccaa 35129568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 12714162 - 12714212
Alignment:
Q  111 taaaggtgtatttctagaacggatcttacaacacagtaatactccgataca 161  Q
    ||||||||||||||||||||||||||||||   || ||||||| |||||||    
T  12714162 taaaggtgtatttctagaacggatcttacagtgcaataatacttcgataca 12714212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 32551473 - 32551566
Alignment:
Q  161 acggatcttacaacacagtaagactccaatacaattgtagctagactgttttatcttcgaggcgtcatggttaatagtctgtttgcacaatttt 254  Q
    ||||||||||||| ||| || || | | ||||| ||||||| ||||||||||||| |   |||||  ||||| |||||||| ||||||||||||    
T  32551473 acggatcttacaatacaataggagttcgatacagttgtagccagactgttttatcatgagggcgttgtggttgatagtctgcttgcacaatttt 32551566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 171731 - 171828
Alignment:
Q  223 cgtcatggttaatagtctgtttgcacaattttcggcattttcatgaaaagtcttaaa-atagcgacataatccgcgactcagcctagtagtctcttcg 319  Q
    |||| ||||| |||||||| |||||||||||| |||| |  || |||| |||||||| | |||||| || || |||||||||||||||| ||||||||    
T  171731 cgtcgtggttgatagtctgcttgcacaattttaggcagtgccacgaaacgtcttaaagagagcgacctagtctgcgactcagcctagtaatctcttcg 171828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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