View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4149_high_7 (Length: 365)
Name: NF4149_high_7
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_high_7 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 182 - 350
Target Start/End: Complemental strand, 30219670 - 30219502
Alignment:
| Q |
182 |
caagagatttttatatttggtacttcgaaatctgacacttggctacaaaaagccaagtccccttgatattaatatatacactagtagcaatttcattttt |
281 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30219670 |
caagagatttttatatttggtacttcaaaatctgacacttggctacaaaaagccaagtccccttgatattaatatatacactagtagcaatttcattttt |
30219571 |
T |
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| Q |
282 |
atatagttacggcatagctaccttgattttgattgatacataaatgctgattgtacacttcttagttct |
350 |
Q |
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| T |
30219570 |
atatagttacggcatagctaccttgattttgattgatacataaatgctgattgtacacttcttagttct |
30219502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 30219854 - 30219711
Alignment:
| Q |
4 |
agcaaaggcatagttcgtgagtcatcaattggaatagctaattccagatacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtg |
103 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30219854 |
agcaaaggcatagtttgtgagtcatcaattggaatagctaattccagaaacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtg |
30219755 |
T |
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| Q |
104 |
gactcactggctcttgaacttcttcattgaatttgtccattatg |
147 |
Q |
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| T |
30219754 |
gactcactggctcttgaacttcttcattgaatttgtccattatg |
30219711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 30049133 - 30049253
Alignment:
| Q |
27 |
atcaattggaatagctaattccagatacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctcttgaacttct |
126 |
Q |
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| T |
30049133 |
atcaaatggaatagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtattgaccatgaggactcactggctcttgaacttct |
30049232 |
T |
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| Q |
127 |
tcattgaatttgtccattatg |
147 |
Q |
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| T |
30049233 |
tcattgaatttgtccattatg |
30049253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 30063474 - 30063594
Alignment:
| Q |
27 |
atcaattggaatagctaattccagatacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctcttgaacttct |
126 |
Q |
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| T |
30063474 |
atcaaatggaatagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtattgaccatgaggactcactggctcttgaacttct |
30063573 |
T |
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| Q |
127 |
tcattgaatttgtccattatg |
147 |
Q |
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||||||||||||||||||||| |
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| T |
30063574 |
tcattgaatttgtccattatg |
30063594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 30033026 - 30033153
Alignment:
| Q |
20 |
gtgagtcatcaattggaatagctaattccagatacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctcttg |
119 |
Q |
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|||||| ||||| ||||||||| || |||||| | |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
30033026 |
gtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttg |
30033125 |
T |
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| Q |
120 |
aacttcttcattgaatttgtccattatg |
147 |
Q |
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| T |
30033126 |
aacttcttcatagaacttgtccattatg |
30033153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 30229244 - 30229364
Alignment:
| Q |
27 |
atcaattggaatagctaattccagatacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctcttgaacttct |
126 |
Q |
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||||| |||||| |||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30229244 |
atcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgaggactcactggctcttgaacttct |
30229343 |
T |
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| Q |
127 |
tcattgaatttgtccattatg |
147 |
Q |
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|| |||||||||||||||| |
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| T |
30229344 |
ccaaagaatttgtccattatg |
30229364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 30264838 - 30264932
Alignment:
| Q |
22 |
gagtcatcaattggaatagctaattccagatacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctc |
116 |
Q |
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| T |
30264838 |
gagtcatcaattggaatttctaattccaaaaatccaaaaacatatgaacataggggaggggtgttgaaatattgtccacttggacttactggctc |
30264932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 30287350 - 30287256
Alignment:
| Q |
22 |
gagtcatcaattggaatagctaattccagatacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctc |
116 |
Q |
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||||||||||||||||| ||||||||| | | ||||||||||||||||||| || | | ||||||||||||||| |||||| |||||||| |
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| T |
30287350 |
gagtcatcaattggaatttctaattccaaaaatccaaaaacatatgaacataggggaggggtgttgaaatattgtccacttggacttactggctc |
30287256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 13845 - 13768
Alignment:
| Q |
25 |
tcatcaattggaatagctaattccagatacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgt |
102 |
Q |
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|||| |||||| ||||||||||||||| | ||||||||| ||| |||||| |||||||| |||||||||||||||||| |
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| T |
13845 |
tcataaattggtatagctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaatattgtccatgt |
13768 |
T |
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