View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4149_low_10 (Length: 311)
Name: NF4149_low_10
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 8553922 - 8554136
Alignment:
| Q |
14 |
agggaataaagggagggtttcaatttcaggtgaaccattttcttgtccttgttcatattcttccatgatttcttcatttggtcttattttttcaaataag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8553922 |
agggaataaagggagggtttcaatttcaggtgaaccattttcttgtccttgatcatattcttccatgatttcttcatttggtcttattttttcaaataag |
8554021 |
T |
|
| Q |
114 |
ttggcataagctgaagaatatggatcgacatgatgaccaatccatcctatgtgagggtttatggtacttccaacttgactgctgctacatccagctgaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8554022 |
ttggcataagctgaagaatatggatcgacatgatgaccaatccatcctatgtgagggtttatggtacttccaacttgactgctgctacatccagctgaaa |
8554121 |
T |
|
| Q |
214 |
ttgtacactcctaag |
228 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8554122 |
ttgtacactcctaag |
8554136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 8554160 - 8554207
Alignment:
| Q |
251 |
cttgatatttcaacattttgcagaagaaaataaatatatgtgacatgt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8554160 |
cttgatatttcaacattttgcagaagaaaataaatatatgtgacatgt |
8554207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University