View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4149_low_13 (Length: 277)
Name: NF4149_low_13
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 32897428 - 32897679
Alignment:
| Q |
19 |
agaaggttcaccagccaaccaagaatcaagtat----cttctaacaattcctgtgattagcaaagatgcatgtgtatgaattggcaatctccaagcctaa |
114 |
Q |
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| T |
32897428 |
agaaggttcaccagccaaccaagaatcaagtatatatcttctaacaattcctctgattaacaaagatgcatgtgtatgaattggcaatctccaagcctaa |
32897527 |
T |
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| Q |
115 |
gaaaaatctcagcttaccaaggttaaattgttgatcgaagaaatatttgacatcctgaatttcttgtatagaactaccggctaacacaatatcatcaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32897528 |
gaaaaatctcagcttaccaaggttaaattgttgatcgaagaaatatttgacatcctgaatttcttgcatagaactaccggctaacacaatatcatcaaca |
32897627 |
T |
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| Q |
215 |
aataaacactagaaagacaataaaatggaatgatcagattgacattgttcat |
266 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32897628 |
aataaacactagaaagacaataaaatggaatgataagattgacattgttcat |
32897679 |
T |
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