View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4149_low_2 (Length: 478)

Name: NF4149_low_2
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4149_low_2
NF4149_low_2
[»] chr3 (5 HSPs)
chr3 (19-468)||(50554379-50554863)
chr3 (19-178)||(50817326-50817485)
chr3 (19-178)||(50858379-50858538)
chr3 (196-317)||(50816972-50817093)
chr3 (196-317)||(50858771-50858892)
[»] chr1 (1 HSPs)
chr1 (379-443)||(1131520-1131584)


Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 50554863 - 50554379
Alignment:
Q  19 agcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagt 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50554863 agcttcaacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatcagtaaactgtttatatagtgttgcattttccagt 50554764  T
Q  119 ttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatgct-------------------cacaaaagattatgctcca 199  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||                   |||||||||||||||||||    
T  50554763 ttcagtttttcaacctgagagatcaaaattcaaatgggaagaaaatgatgactacttatgctgtttagctgttatacatctcacaaaagattatgctcca 50554664  T
Q  200 aaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50554663 aaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctgaaac 50554564  T
Q  300 catgtcatgaatcattattatatcataatttgaaaaccacatataataag----------------aagttagacggaaataccttctttggcgtttcat 383  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||                ||||||||||||||||||||||||||||||||||    
T  50554563 catgtcatgaatcattattatatcataatttgaaaaccaaatataataagaaaagtgttgtatttaaagttagacggaaataccttctttggcgtttcat 50554464  T
Q  384 atcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatccgatgaaccacttgctgtccctttg 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50554463 atcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatccgatgaaccacttgctgtccctttg 50554379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 50817485 - 50817326
Alignment:
Q  19 agcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagt 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||| |||||||||||||||    
T  50817485 agcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaactgtttgtatagggttgcattttccagt 50817386  T
Q  119 ttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg 178  Q
    ||||||||| |||||| ||| ||||||||||||||| ||||||| |||| ||||||||||    
T  50817385 ttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg 50817326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 50858379 - 50858538
Alignment:
Q  19 agcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagt 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||| |||||||||||||||    
T  50858379 agcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaactgtttgtatagggttgcattttccagt 50858478  T
Q  119 ttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg 178  Q
    ||||||||| |||||| ||| ||||||||||||||| ||||||| |||| ||||||||||    
T  50858479 ttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg 50858538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 50817093 - 50816972
Alignment:
Q  196 tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg 295  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |  ||| ||| ||||||||    
T  50817093 tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg 50816994  T
Q  296 aaaccatgtcatgaatcattat 317  Q
    ||||||||||||||||||||||    
T  50816993 aaaccatgtcatgaatcattat 50816972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 50858771 - 50858892
Alignment:
Q  196 tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg 295  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |  ||| ||| ||||||||    
T  50858771 tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg 50858870  T
Q  296 aaaccatgtcatgaatcattat 317  Q
    ||||||||||||||||||||||    
T  50858871 aaaccatgtcatgaatcattat 50858892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 1131520 - 1131584
Alignment:
Q  379 ttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatc 443  Q
    ||||||||||| || |||||| |||||||||||||||||| ||||| ||||||||| ||||||||    
T  1131520 ttcatatcaacagggtttgtactttgttcacaaggacctgcttcatcatcttcatcagatggatc 1131584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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