View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4149_low_4 (Length: 443)
Name: NF4149_low_4
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 43735581 - 43736007
Alignment:
| Q |
1 |
aaagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccatcatcaaaatcattcccattt |
100 |
Q |
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| T |
43735581 |
aaagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccatcatcaaaatcattcccattt |
43735680 |
T |
|
| Q |
101 |
ggtcttcaagtatcatggtgtcagttagcagtagccaatcctcatatcatttgctacaagcccaaaccatggacagacacatcacttcaaactttgaaat |
200 |
Q |
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| T |
43735681 |
ggtcttcaagtatcatggtgtcagttagcagtagccagtcctcatatcatttgctacaagcccaaaccatggacagacacatcacttcaaactttgaaat |
43735780 |
T |
|
| Q |
201 |
tccagcaggttcgttcggtgtcttcataatgttggcagtgttcataactgcaggcgtttacgaccgtatcttccttcctctcgcgtcaaagataagagga |
300 |
Q |
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| T |
43735781 |
tccagcaggatcgttcggtgtcttcataatgttggcagtgttcataactgcaggcgtttacgaccgtatcttccttcctctcgcgtcaaagataagagga |
43735880 |
T |
|
| Q |
301 |
aaacaagttactatcagtgccnnnnnnngaataggaattggaannnnnnnctccattctagacttggtagtttcagcaattgtggaaactataaggagnn |
400 |
Q |
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| T |
43735881 |
aaacaagttactatcagtgccaaaaaaagaataggaattggaatttttttctccattctagacttggtagtttcagcaattgtggaaactataaggagaa |
43735980 |
T |
|
| Q |
401 |
nnnnngcaattcaagaaggatatattg |
427 |
Q |
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| T |
43735981 |
aaaaagcaattcaagaaggatatattg |
43736007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 43703530 - 43703608
Alignment:
| Q |
2 |
aagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccat |
80 |
Q |
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||||||||||||| ||||| ||||| ||| | |||| |||||| ||| |||||||||||||||| ||||||||||| |
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| T |
43703530 |
aagatatagcctcagatggttcagcgataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccat |
43703608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 43714501 - 43714579
Alignment:
| Q |
2 |
aagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccat |
80 |
Q |
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||||||||||||| ||||| ||||| ||| | |||| |||||| ||| |||||||||||||||| ||||||||||| |
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| T |
43714501 |
aagatatagcctcagatggttcagcgataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccat |
43714579 |
T |
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