View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4149_low_5 (Length: 441)
Name: NF4149_low_5
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 99 - 432
Target Start/End: Original strand, 41593940 - 41594273
Alignment:
| Q |
99 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41593940 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagc |
41594039 |
T |
|
| Q |
199 |
aatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacatttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41594040 |
aatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacatttt |
41594139 |
T |
|
| Q |
299 |
gttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaactt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41594140 |
gttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaactt |
41594239 |
T |
|
| Q |
399 |
ttgaagcataagtgattttgacttatagaattat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41594240 |
ttgaagcataagtgattttgacttatagaattat |
41594273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 99 - 432
Target Start/End: Complemental strand, 12869838 - 12869505
Alignment:
| Q |
99 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagc |
198 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12869838 |
aaacttcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagc |
12869739 |
T |
|
| Q |
199 |
aatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacatttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12869738 |
aatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacatttt |
12869639 |
T |
|
| Q |
299 |
gttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaactt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12869638 |
gttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaactt |
12869539 |
T |
|
| Q |
399 |
ttgaagcataagtgattttgacttatagaattat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12869538 |
ttgaagcataagtgattttgacttatagaattat |
12869505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 99 - 432
Target Start/End: Original strand, 43522544 - 43522877
Alignment:
| Q |
99 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43522544 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcttctcttgctatggcagattggcagtagc |
43522643 |
T |
|
| Q |
199 |
aatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacatttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43522644 |
aatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagcaacatttt |
43522743 |
T |
|
| Q |
299 |
gttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaactt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43522744 |
gttcacattttgttcataaatgaatgtttttctatggcagtggcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaactt |
43522843 |
T |
|
| Q |
399 |
ttgaagcataagtgattttgacttatagaattat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43522844 |
ttgaagcataagtgattttgacttatagaattat |
43522877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 99 - 432
Target Start/End: Original strand, 14006809 - 14007131
Alignment:
| Q |
99 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14006809 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcatttgttatgtgattctcatctcttgttatggcagattggcagtagc |
14006908 |
T |
|
| Q |
199 |
aatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagtagcaacatttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14006909 |
aatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtagcaatgtttttctatggtagtagca------- |
14007001 |
T |
|
| Q |
299 |
gttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaactt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14007002 |
----acattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaactt |
14007097 |
T |
|
| Q |
399 |
ttgaagcataagtgattttgacttatagaattat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
14007098 |
ttgaagcataagtgattttgacttatagaattat |
14007131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 315 - 432
Target Start/End: Complemental strand, 23123785 - 23123668
Alignment:
| Q |
315 |
taaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttcaattaaacttttgaagcataagtgat |
414 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23123785 |
taaatgaatgtttttatatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgtttccaattaaacttttgaagcataagtgat |
23123686 |
T |
|
| Q |
415 |
tttgacttatagaattat |
432 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23123685 |
tttgacttatagaattat |
23123668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 23123990 - 23123876
Alignment:
| Q |
99 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagc |
198 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
23123990 |
aaactacaatgttttcatatttttgttgttatgcacatcttgagcaaccttgcaattgttatgtgattctctgctcttgttatg--------gcagtagc |
23123899 |
T |
|
| Q |
199 |
aatgttatcacggcccacccaca |
221 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23123898 |
aatgttatcacggcccacccaca |
23123876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 23123836 - 23123753
Alignment:
| Q |
189 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgt |
273 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||| |
|
|
| T |
23123836 |
tggcagtagcaatgttatcacggctcacccacattttgttcatattattggta-aatgaatgtttttatatggcagtagcaatgt |
23123753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 189 - 432
Target Start/End: Complemental strand, 22512411 - 22512190
Alignment:
| Q |
189 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagtagcaatgtttttctatggcagtatcaatgtttttctatggtagta |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
22512411 |
tggcagtagcaatgttatcacggcccacccacattttgttcatattattggtagcggcaatgtttttctatgg----------------------tagta |
22512334 |
T |
|
| Q |
289 |
gcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtagcaatgtgccaatgtgttatttgcaatgaatatgttctaattgttttc |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22512333 |
gcaacattttgttcacattttgttcataaatgaatgtttttctatggcagtcgcaatgtgccaatgtgttatttgcaatgaatatgttctaattgtttcc |
22512234 |
T |
|
| Q |
389 |
aattaaacttttgaagcataagtgattttgacttatagaattat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22512233 |
aattaaacttttgaagcataagtgattttgacttatagaattat |
22512190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 22512565 - 22512451
Alignment:
| Q |
99 |
aaactgcaatgttttcatatttttgttgttatgcacatcttgaggaaccttgcatttgttatgtgattctcttctcttgttatggcagattggcagtagc |
198 |
Q |
| |
|
|||||| ||| |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
22512565 |
aaactggaatattttcagttttttgtagttatgcacatcttgagcaaccttgcatttgttatgtgattctcttatcttgtta--------tgacagtagc |
22512474 |
T |
|
| Q |
199 |
aatgttatcacggcccacccaca |
221 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
22512473 |
aatgttatcacgggccacccaca |
22512451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 39702798 - 39702855
Alignment:
| Q |
351 |
aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcat |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
39702798 |
aatgtgttcatttgcaatgaatatgttctaatcgtttccagttaaacttttgaagcat |
39702855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 48725183 - 48725115
Alignment:
| Q |
351 |
aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcataagtgattttg |
418 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
48725183 |
aatgtgttcatttgcaatgaatatgttctaattgtttccaattaaacttttgaagcatcagtgattttg |
48725115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 42884014 - 42883957
Alignment:
| Q |
351 |
aatgtgtt-atttgcaatgaatatgttctaattgttttcaattaaacttttgaagcat |
407 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
42884014 |
aatgtgttcattttcaatgaatatgttctaattgtttccagttaaacttttgaagcat |
42883957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 32103315 - 32103271
Alignment:
| Q |
112 |
ttcatatttttgttgttatgcacatcttgaggaaccttgcatttg |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
32103315 |
ttcatatttttgttgttatgcacatcttgagcaaccgttcatttg |
32103271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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