View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4149_low_6 (Length: 418)
Name: NF4149_low_6
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 4656374 - 4655960
Alignment:
| Q |
17 |
aagaatttgaaaggtcaaaagtataactcaaagtgtgagagaaaccataagagtaacaacattcactttgacatataagtaaaattgtaagctt------ |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
4656374 |
aagaatttgaaaggtcaaaagcataactcaaagtgtgagagaaaccataagagtaacaacattcaccgtgacatataagtaaaattgtaaacttaagtaa |
4656275 |
T |
|
| Q |
111 |
----------ttc----tttactcgtaaatgcatatgcattgaccattcatgcataatgacaccccctcgtaggaacaatcattacttgagcaatcggag |
196 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4656274 |
tacagttagtttccaactttactcgtaaatgcatatgcattgaccattcatgcataatgacaccccctcgtaggaacaatgattacttgagcaatcggat |
4656175 |
T |
|
| Q |
197 |
gtatcggtacaattattagctgaaatgtaaaaata--agaataaaagaatgttattgaaaatggtcaaaagattatgtatgaggtcaatttgaaaacttg |
294 |
Q |
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||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4656174 |
atatcggtacaattatgagctgaaatgtaagaatacaagaataaaagaatgttattgaaaatggtcaaaatattatgtatgaggtcaatttgaaaacttg |
4656075 |
T |
|
| Q |
295 |
aatgcaacgagaaaaaggcttaccattggcattggtaacaacaagaaatagagaaattaaaatgaacatagtataaacaaacttaaaaaacttagtcata |
394 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4656074 |
aatgcaatgagaaaaaggcttaccattggcattggtaacaacaagaaatagagaaattaaaatgaacatagtataaacaaacttaaaaaacttagtcata |
4655975 |
T |
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| Q |
395 |
tttggtttcctatgc |
409 |
Q |
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||||||||||||||| |
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| T |
4655974 |
tttggtttcctatgc |
4655960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 113 - 409
Target Start/End: Complemental strand, 4647812 - 4647515
Alignment:
| Q |
113 |
ctttactcgtaaatgcatatgcattgaccattcatgcataatgacaccccctcgtaggaacaatcattacttgagcaatcggaggtatcggtacaattat |
212 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4647812 |
ctttactcgtaaatgcatatacattgaccattcatgcataatgacaccccctcataggaacaatgattacttgagcaatcggaggtatcggtacaattat |
4647713 |
T |
|
| Q |
213 |
tagctgaaatgtaaaaataagaataaaagaatgttattgaaaatggtcaaaagattatgtatgaggtcaatttgaaaacttgaatgcaacgag-aaaaag |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
4647712 |
tagctgaaatgtaaaaataagaataaaagaatgttattgaaaatggtcagaagattatgtatgaggtcaatttgaaaacttgaatacggtgagaaaaaag |
4647613 |
T |
|
| Q |
312 |
gcttaccattggcattggtaacaacaagaaatagagaaattaaaatgaacatagtataaacaaacttaaaaaacttagtcatatttggtttcctatgc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4647612 |
tcttaccattggcattggtaacaacaagaaatagagaaattaaaatgaacatagtataaacaaacttaaaaaacttggtcatatttggtttcctatgc |
4647515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 4647930 - 4647837
Alignment:
| Q |
17 |
aagaatttgaaaggtcaaaagtataactcaaagtgtgagagaaaccataagagtaacaacattcactttgacatataagtaaaattgtaagctt |
110 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4647930 |
aagaaattgaaaggtcaaaaatataactcaaagtgtgagagaaaccataagagtaacaacattcactttgacatataagtaaaattgtaagctt |
4647837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 31038244 - 31038188
Alignment:
| Q |
340 |
aaatagagaaattaaaatgaacatagtataaacaaacttaaaaaacttagtcatatt |
396 |
Q |
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|||||||||||| ||||||| |||| |||||||||||||| ||||||| ||||||| |
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| T |
31038244 |
aaatagagaaatcaaaatgatcataccataaacaaacttaagaaacttaatcatatt |
31038188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 23233497 - 23233451
Alignment:
| Q |
332 |
acaacaagaaatagagaaattaaaatgaacatagtataaacaaactt |
378 |
Q |
| |
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|||||||||||||| |||| |||||||| ||||||||||| |||||| |
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| T |
23233497 |
acaacaagaaatagggaaactaaaatgatcatagtataaaaaaactt |
23233451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 22815879 - 22815825
Alignment:
| Q |
324 |
cattggtaacaacaagaaatagagaaattaaaatgaacatagtataaacaaactt |
378 |
Q |
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||||| |||||||||||||||||||||| |||| || ||| ||||||||||||| |
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| T |
22815879 |
cattgataacaacaagaaatagagaaataaaaaggagtataatataaacaaactt |
22815825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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