View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4149_low_7 (Length: 374)
Name: NF4149_low_7
Description: NF4149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4149_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 366
Target Start/End: Complemental strand, 5274273 - 5273929
Alignment:
| Q |
22 |
ccatatgaatgactcacatgacctgaaacagcgcacaacaaaattaatattaccaaatcaaatcatcaaattcatagcattgcttcaccagcaagcaaaa |
121 |
Q |
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| T |
5274273 |
ccatatgaatgactcacatgacctgaaacagcgcacaacaaaattaatattaccaaatcaaatcatcaaattcatagcattgcttcaccagcaagcaaaa |
5274174 |
T |
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| Q |
122 |
ccatcccaaaaacaagagccagccacattccatccacattagaataaccagcaccagaagcttctgcaggcaagtcattattctcatcatcgtcatcctt |
221 |
Q |
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| T |
5274173 |
ccatcccaaaaacaagagccagccacattccatccacatttgaataaccagcaccagaagcttctgcaggcaagtcattattctcatcatcgtcatcctt |
5274074 |
T |
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| Q |
222 |
tgctgatgatgacttgcttctatcatcaggcttagctgaatctcctttagaaactggtgcaggtgcaggagctttagctggaagcacaagatcaagagga |
321 |
Q |
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| T |
5274073 |
tgctgatgatgacttgcttctatcatcaggcttagctgaatctcctttagaaaccggtgcaggtgcaggagctttagcaggaagcacaagatcaagagga |
5273974 |
T |
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| Q |
322 |
acaagaaccttgtcaacctgatatatagctagtttgttgtctgtg |
366 |
Q |
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| T |
5273973 |
acaagaaccttgtcaacctgatatatagctagtttgttgtctgtg |
5273929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 36151495 - 36151422
Alignment:
| Q |
289 |
ggagctttagctggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtc |
362 |
Q |
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| T |
36151495 |
ggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtc |
36151422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 36154881 - 36154808
Alignment:
| Q |
289 |
ggagctttagctggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtc |
362 |
Q |
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||||| ||||| ||||| |||||||||||||| | ||| ||||| ||||||||||| ||||| |||||| |||| |
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| T |
36154881 |
ggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtc |
36154808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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