View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4150_low_1 (Length: 417)
Name: NF4150_low_1
Description: NF4150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4150_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 34274959 - 34274554
Alignment:
| Q |
10 |
agcagcagagatggtatcagcaaacgaacttgaatactcagttgcatcagggtcctcaatttcgttagatgcatcaggaacgacttctgcacttgtaatg |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274959 |
agcatcagagatggtatcagcaaacgaacttgaatactcagttgcatcagggtcctcaatttcgttagatgcatcaggaacgacttctgcacttgtaatg |
34274860 |
T |
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| Q |
110 |
tcgatttgttcctcaggaacggactccaccttaatgacatgcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattca |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274859 |
tcgatttgttcctcaggaacggactccaacttaatgacatgcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattca |
34274760 |
T |
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| Q |
210 |
accaattcaaaatcaacttgttacgcataacatactgctgttatttatttgacagtgcatttatattattatattcttctatagatcagactggatttcg |
309 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34274759 |
accaattcaaaatcaacttgttacgtataacatactgctgttatttatttgacagtgcatttatattattatatttttctatagatcagactggatttcg |
34274660 |
T |
|
| Q |
310 |
atagatcagtcaatagaatcaatatctatgaacataatgaagatcaaaattcaaatatcaagttcatttttcatagctaagatgattacattgaagatgt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34274659 |
atagatcagtcaatagaatcaatatctatgaacataatgaagatcaaaattcaaatatcaagttcatttgtcatagctaagatgattacattgaagatgt |
34274560 |
T |
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| Q |
410 |
gcaatt |
415 |
Q |
| |
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| |||| |
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| T |
34274559 |
gaaatt |
34274554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 34281750 - 34281707
Alignment:
| Q |
23 |
gtatcagcaaacgaacttgaatactcagttgcatcagggtcctc |
66 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
34281750 |
gtatcagcaaaggaactcgaatattcagttgcatcagggtcctc |
34281707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 20229778 - 20229857
Alignment:
| Q |
150 |
gcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattcaaccaattcaaaatcaacttg |
229 |
Q |
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|||||||||||||||||||||||||| ||||||| || | |||| || || ||||||||| |||||||||| |||||| |
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| T |
20229778 |
gcttagccatcttcacctttttagttacctgttcaaaatctaaattcataactaaattcaatgaattcaaaattaacttg |
20229857 |
T |
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