View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4151_high_2 (Length: 417)
Name: NF4151_high_2
Description: NF4151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4151_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 46353387 - 46353595
Alignment:
| Q |
13 |
aatattggatagcaagtacaaaattgtttttaacatgtataattgaccatgttgagtaggacctaatcctccttagttaacactaattagcaatgacgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46353387 |
aatattggatagcaagtacaaaattgtttttaacatgtataattgaccatgttgagtaggacctaatcctccttagttaacactaattagcaatgacgat |
46353486 |
T |
|
| Q |
113 |
tacaatgtaaattgctgatttgacaagaagtaataataagtagattgtaagtaacccttcgaaaattggacattatattttggcttaaccatattgctta |
212 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46353487 |
tacaatgtaaattactgatttgacaacaagtaataataagtagattgtaagtaacccttcgaaaattggacattatattttggcttaaccatattgctta |
46353586 |
T |
|
| Q |
213 |
ttacaattc |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
46353587 |
ttacaattc |
46353595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 273 - 400
Target Start/End: Original strand, 46353645 - 46353772
Alignment:
| Q |
273 |
gatagagaaagaggtggagggttgattaacgtgttttttggaatttgcaaaggaagggatttagatgaaacagttatttgaagataaagttggtccaatt |
372 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46353645 |
gatagagaaagatgtggagggttgattaacgtgttttttggaatttgcaaaggaagggatttagatgaaacagttatttgaagataaagttggtccaatt |
46353744 |
T |
|
| Q |
373 |
gaacgtgtttttgtttgggatcattcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46353745 |
gaacgtgtttttgtttgggatcattcat |
46353772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University