View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4151_high_4 (Length: 384)
Name: NF4151_high_4
Description: NF4151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4151_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 85 - 374
Target Start/End: Original strand, 4928764 - 4929055
Alignment:
| Q |
85 |
atgagaacaataaaactcaacaacacatgttagaccctaatgtggcactaaatgtgttccaatattttcattctccggcacaaattatggaagtnnnnnn |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4928764 |
atgagaacgataaaactcaacaacacatgttagaccctaatgtgggactaaatgtgttccaatattttcattctccggcacaaattatggaagtaaaaaa |
4928863 |
T |
|
| Q |
185 |
nnnn--ctttaagaactaaaatggtatatgcaattttatgtcgtgaactaattttggtcttttcgcatatttaatgcagataattttagaagttagacta |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4928864 |
aaaaaactttaagaactaaaatggtatatgcaattttatgtcgtgaactaattttggtcttttcgcatatttaatgcagataattttagaagttagacta |
4928963 |
T |
|
| Q |
283 |
aatgcttttgctgacaggtacatatggtttcatcgcaccagagtatctgcaaaccggaatttacacagataaatgtgacgtttactcctttg |
374 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4928964 |
aatgcttttgctgacaggtccatatggtttctgtgcaccagagtatctgcaaaccagaacttacacagataaatgtgacgtttactcctttg |
4929055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University