View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4151_high_5 (Length: 333)
Name: NF4151_high_5
Description: NF4151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4151_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 45936213 - 45935897
Alignment:
| Q |
2 |
attcctgttctatgttccaagtctgtaaaattgagctaacagggaaaggaaataatctgaattcgcaaaatttcatgttctcttcaaactgaaaactttc |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45936213 |
attcctgttctatgttccaagtctgtaaaattgagctaacagggaaaggaaataatcagaattcgcaaaatttcatgttctcttcaaaccgaaaactttc |
45936114 |
T |
|
| Q |
102 |
ggttccttcctacattggaaaaatatggaatcagtgaatagaggaaaatttacactatcaaaaattcacaatcaatcatatgtacgagtttagaagtagt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45936113 |
ggttccttcctacattggaaaaatatggaatcagtgagtagaggaaaatttacactatcaacaattcacaatcaatcatatgtacgagtttagaagtagt |
45936014 |
T |
|
| Q |
202 |
tatcgttaaagttacatgcttttaatgatataaaaattacgagtgaaaaaatctttacattgacggcgcatataaattaaaatcatataggaaatgcaag |
301 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45936013 |
tatcgttaaagttaaatggttttaatgatataaaaattacgagtgaaaaaatctttacattgacggcgcatataaattaaaatcatataggaaatgcaag |
45935914 |
T |
|
| Q |
302 |
atgttacctgaaaaata |
318 |
Q |
| |
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||||||||||||||||| |
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| T |
45935913 |
atgttacctgaaaaata |
45935897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 15818232 - 15818012
Alignment:
| Q |
2 |
attcctgttctatgttccaagtctgtaaaattgagctaacagggaaaggaaataatctgaattcgcaaaatttcatgttctcttcaaactgaaaactttc |
101 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||| | |
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| T |
15818232 |
attcctgttctatgttctaagtcagtaaaattgagctaacagggaaaggaagtaatcagaattcccaaaatttcatgttctcttcaaaccgaaaacttcc |
15818133 |
T |
|
| Q |
102 |
ggttccttcctacattggaaaaatatggaatcagtgaatagaggaaaatttacactatcaaaaattcacaatcaatcatatgtacgagtttagaagtagt |
201 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
15818132 |
ggttccttcctacattggaaaaatagggaatcagtgagtagaggaaaattt----------------acaatcaatcatatgtacgagtttagaagacgt |
15818049 |
T |
|
| Q |
202 |
tatcgttaaagttacatgcttttaatgatataaaaat |
238 |
Q |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
15818048 |
tatcgttaaagttaaatggttttaatgatataaaaat |
15818012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 15831342 - 15831266
Alignment:
| Q |
2 |
attcctgttctatgttccaagtctgtaaaattgagctaacagggaaaggaaataatctgaattcgcaaaatttcatg |
78 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
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|
| T |
15831342 |
attcctgttctacgttctaagtcagtaaaattgagctaacagggaaaggaaataatcagaattcccaaaaattcatg |
15831266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 15818016 - 15817978
Alignment:
| Q |
280 |
aaaatcatataggaaatgcaagatgttacctgaaaaata |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15818016 |
aaaatcatataggaaatgcaagatgttacctgaaaaata |
15817978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 5192064 - 5191949
Alignment:
| Q |
33 |
tgagctaacagggaaaggaaataatctgaattcgcaaaatttcatgttctcttcaaactgaaaactttcggttccttcctacattgga-aaaatatggaa |
131 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| || ||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| |
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| T |
5192064 |
tgagctaatagggaaaggaaa--atcagaactcccaaaaattcttgttctcttcaaactgaaaactttcgggaccttcctacatcggacaaaataaggaa |
5191967 |
T |
|
| Q |
132 |
tcagtgaatagaggaaaa |
149 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
5191966 |
tcagtgaggagaggaaaa |
5191949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 5164626 - 5164552
Alignment:
| Q |
76 |
atgttctcttcaaactgaaaactttcggttccttcctacattggaaaa-atatggaatcagtgaatagaggaaaa |
149 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||| ||||||||| |
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| T |
5164626 |
atgttctcatcaaactgaaaactttcggttcctgcctacattgaaaaatataaggaatcagtgaggagaggaaaa |
5164552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 5164446 - 5164330
Alignment:
| Q |
167 |
tcacaatcaatcatatgtacgagtttagaagtagttatcgttaaagttacatgcttttaatgatataaaaattacgagtg-aaaaaatctttacattgac |
265 |
Q |
| |
|
||||||| ||| |||||||| | |||||||||||||||| || |||||| ||| ||| |||||||| | |||| | |||| |||||||||||| |||| | |
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|
| T |
5164446 |
tcacaattaattatatgtacaactttagaagtagttatcattgaagttaaatgatttcaatgatatgacaattgcaagtgtaaaaaatctttaaattggc |
5164347 |
T |
|
| Q |
266 |
ggcgcatataaattaaa |
282 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
5164346 |
tgtgcatataaattaaa |
5164330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 5186491 - 5186340
Alignment:
| Q |
2 |
attcctgttctatgttccaagtctgtaaaattgagctaacagggaaaggaaataatctgaattcgcaaaatttcatgttctcttcaaactgaaaactttc |
101 |
Q |
| |
|
|||||| |||||||||| ||||| || ||||||||||||||||| ||||||| ||| || | ||| ||| | ||||||||||||||||||||||| |
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|
| T |
5186491 |
attcctcttctatgttctaagtcagtgaaattgagctaacagggtaaggaaaatcagagaactccccaaaattcttattctcttcaaactgaaaactttc |
5186392 |
T |
|
| Q |
102 |
ggttccttcctacattgg----aaaaatatggaatcagtgaatagaggaaaa |
149 |
Q |
| |
|
| ||| | | ||||| || ||||| ||||||||||||| ||||||||| |
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|
| T |
5186391 |
gattcatgcttacatcggaagaaaaaaaatggaatcagtgaggagaggaaaa |
5186340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 5186214 - 5186136
Alignment:
| Q |
190 |
tttagaagtagttatcgttaaagttacatgcttttaatgatataaaaattacgagtg-aaaaaatctttacattgacgg |
267 |
Q |
| |
|
|||||||||||||||| | |||||| ||| |||||||||||| | |||| |||||| ||||||||| || |||||||| |
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|
| T |
5186214 |
tttagaagtagttatcaatgaagttaaatggttttaatgatatgacaattgcgagtgtaaaaaatctgtaaattgacgg |
5186136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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