View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4151_high_8 (Length: 258)
Name: NF4151_high_8
Description: NF4151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4151_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 31127093 - 31127327
Alignment:
| Q |
9 |
agcagagagaggttaaatgcagcgattccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaag |
108 |
Q |
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| T |
31127093 |
agcagtgagaggttaaatgcagcgattccatttctatggaaagtgaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaag |
31127192 |
T |
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| Q |
109 |
taagaggactcagccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagtt |
208 |
Q |
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| T |
31127193 |
taagaggactc-gccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagtt |
31127291 |
T |
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| Q |
209 |
caggtcattcagatgaatcttttgttgttgatattg |
244 |
Q |
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| T |
31127292 |
caggtcattcagatgaatcttttgttgttgatattg |
31127327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 31128773 - 31129007
Alignment:
| Q |
9 |
agcagagagaggttaaatgcagcgattccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaag |
108 |
Q |
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| T |
31128773 |
agcagcgagaggttaaatgatgccattccatttctatggaaagtgaagaaaatattaaatgttggatccaagaaacggctaaaagaagccgtcgttgaag |
31128872 |
T |
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| Q |
109 |
taagaggactcagccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagtt |
208 |
Q |
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| T |
31128873 |
taagaggactc-gccacaagaatcgttagggaaaagaaaaaagagtttgtagaaaaatcagtgttggaatcattggttattctaccacgacgcttgagtt |
31128971 |
T |
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| Q |
209 |
caggtcattcagatgaatcttttgttgttgatattg |
244 |
Q |
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| T |
31128972 |
acgcacattcagaagaatcttttgcagttgatattg |
31129007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 31077796 - 31078009
Alignment:
| Q |
30 |
gcgattccatttctatggaaagtcaagaaaatattaaatgttgg-atcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaag |
128 |
Q |
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||||||||||| |||||||||| |||||||||||||| | || ||| |||||||| || |||||||| | ||||||||||||||||| || ||||| |
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| T |
31077796 |
gcgattccattgatatggaaagtgaagaaaatattaaacatagggatc-gagcgacgattgaaagaagccgtcgctgaagtaagaggactt-gctacaag |
31077893 |
T |
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| Q |
129 |
aatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatct |
228 |
Q |
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| T |
31077894 |
aatcgttagggaaaagaaaaaagagcttaaagaaaaagcaactttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatca |
31077993 |
T |
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| Q |
229 |
tttgttgttgatattg |
244 |
Q |
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| T |
31077994 |
tttgtagttgatattg |
31078009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 31131826 - 31132035
Alignment:
| Q |
34 |
ttccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcg |
133 |
Q |
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|||||||| |||||||||| || ||| | |||| ||||| | ||||||||||| |||||||||| ||||||||||| || ||| ||||||| ||| | |
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| T |
31131826 |
ttccatttttatggaaagtgaaaaaattcctaaacattggacccgagcgacggttgaaagaagctgtcgctgaagtaagggggctc-gccacaaaaattg |
31131924 |
T |
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| Q |
134 |
ttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgt |
233 |
Q |
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|||||||||||||||| |||||| ||||||| | | |||||||| |||||||| | || |||||||||||||| |||||||| || ||||||||||| |
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| T |
31131925 |
ttagggaaaagaaaaaagagcttaaagaaaaggaaaccttggaatcggtggatattttgtcgcgatttttaagttctggtcattcggacgaatcttttgt |
31132024 |
T |
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| Q |
234 |
tgttgatattg |
244 |
Q |
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|||||||||| |
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| T |
31132025 |
agttgatattg |
31132035 |
T |
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