View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4151_low_1 (Length: 590)
Name: NF4151_low_1
Description: NF4151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4151_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 43032150 - 43031558
Alignment:
| Q |
1 |
caaggtttatcttcttcattatcatggtcaataacgttctcttcatccaaattcaaaccagtagtaaaagcttcatgggacacacaacaaagactccctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43032150 |
caaggtttatcttcttcattatcatggtcaataacgttctcttcatccaaattcaaaccagtagtaaaagcttcatgggacacacaacaaagactccctt |
43032051 |
T |
|
| Q |
101 |
ataaccgcaacgctcctagaaaactcaccactcaaccaccaaaaccacaatctccttctcccacttcttcttcaccagcaccttccacccgtaatgaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43032050 |
ataaccgcaacgctcctagaaaactcaccactcaaccaccaaaaccacaatctccttctcccacttcttcttcaccagcaccttccacccgtaatgaaaa |
43031951 |
T |
|
| Q |
201 |
ttacatttccgatcttctcaaacgcgccactcctcttcccacgataggcaaaatcgaagaagtacaagaacacgatgaaacctatttgggatatgataga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43031950 |
ttacatttccgatcttctcaaacgcgccactcctcttcccacgataggcaaaatcgaagaagtacaagaacacgatgaaacctatttgggatatgataga |
43031851 |
T |
|
| Q |
301 |
tggcttccaactccacctaaagttgttaagcctcgttctgtttttaatgccgctaccttagcttatattggtgattgcatttacgaggtaaccttcttta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43031850 |
tggcttccaactccacctaaagttgttaagcctcgttctgtttttaatgccgctaccttagcttatattggtgattgcatttacgaggtaaccttcttta |
43031751 |
T |
|
| Q |
401 |
caattttattcttaattcctaattattattctctaattatttgtactaaatgaaggttctgttgtggataattggggataactgataagctagttgactt |
500 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
43031750 |
caattttattcttaattcctatttattattctctaattatttgtactaaatgaaggttctgttgtggataattggggataactgataagctaactgacat |
43031651 |
T |
|
| Q |
501 |
agt-------agtagtagataagtttgctgacagtggataagccggaagattgaattcctaagatttagtaaaatttgttattgaactagctg |
586 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43031650 |
agttaataggaatagtagataagtttgctgatagtggataagccggaagattgaattcctaagatttagtaaaatttgttattgaactagctg |
43031558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University