View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4151_low_11 (Length: 248)

Name: NF4151_low_11
Description: NF4151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4151_low_11
NF4151_low_11
[»] chr7 (12 HSPs)
chr7 (101-205)||(21629547-21629651)
chr7 (101-182)||(21788837-21788918)
chr7 (101-203)||(15714213-15714315)
chr7 (101-185)||(21705218-21705302)
chr7 (101-201)||(21647448-21647548)
chr7 (101-205)||(21652745-21652849)
chr7 (101-205)||(21764614-21764715)
chr7 (101-156)||(21657070-21657125)
chr7 (101-182)||(21807627-21807708)
chr7 (111-181)||(21714795-21714865)
chr7 (111-181)||(21786120-21786190)
chr7 (101-179)||(21792583-21792661)
[»] scaffold0182 (1 HSPs)
scaffold0182 (171-203)||(25954-25986)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 21629651 - 21629547
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgatacac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21629651 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgatgcac 21629552  T
Q  201 tatgt 205  Q
    |||||    
T  21629551 tatgt 21629547  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 21788918 - 21788837
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttg 182  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||| |||||||||| ||||||||||    
T  21788918 accttggaattagatgtagtgaggatgattttacgctgaagatcaagaagatgagtgggtgtctctaactgggactcatttg 21788837  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 15714315 - 15714213
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgatacac 200  Q
    |||||||||||||||||| |||||||   ||| || || ||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||||||||||||    
T  15714315 accttggaattagatgtaatgaggatatatttacgctgtagatcaagaagatgagtgggtgtctctgactgtgactcatttcgtaatggtattgatacac 15714216  T
Q  201 tat 203  Q
    |||    
T  15714215 tat 15714213  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 21705302 - 21705218
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggta 185  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||||||||||| || ||| | ||| ||||||||||||||||||    
T  21705302 accttggaattagatgtggtgaggatgattttacgttgaagatcaagaagatgtgtgggtgtttctgactgtgactcatttggta 21705218  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 21647548 - 21647448
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgatacac 200  Q
    |||||||||||||||| | ||||||||| ||| || |||||||||| ||||||||| ||| ||||| | || |||||| |||||| ||||||||||||||    
T  21647548 accttggaattagatggattgaggatgagtttacgctgaagatcaaaaagatgagtgggtgtctctgattgggactcacttggtaatggtattgatacac 21647449  T
Q  201 t 201  Q
    |    
T  21647448 t 21647448  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 21652849 - 21652745
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgatacac 200  Q
    |||||||||||||||||||| ||||||| |||  |  ||||||||||||||||||| ||| ||| | |||||||||||||||||   ||||| |||||||    
T  21652849 accttggaattagatgtagttaggatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggttaaggtatcgatacac 21652750  T
Q  201 tatgt 205  Q
    |||||    
T  21652749 tatgt 21652745  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 21764715 - 21764614
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgatacac 200  Q
    |||||||| || ||||||||||||||||||||  | |||||||| ||||||||||| ||| ||||| ||||||||||||||| ||    |||||||||||    
T  21764715 accttggacttggatgtagtgaggatgactttatgctgaagatctagaagatgagtgggtgtctctgactgtgactcatttgtta---ttattgatacac 21764619  T
Q  201 tatgt 205  Q
    |||||    
T  21764618 tatgt 21764614  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 21657125 - 21657070
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagt 156  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  21657125 accttggaataagatgtagtgaggatgagtttccgttgaagatcaagaagatgagt 21657070  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 21807627 - 21807708
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttg 182  Q
    ||||||||||||||||||| ||| |||| ||| || |||| ||||||||||||||||||| ||||| ||||  |||||||||    
T  21807627 accttggaattagatgtagggagcatgagtttacgctgaacatcaagaagatgagttggtgtctctgactgccactcatttg 21807708  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 21714865 - 21714795
Alignment:
Q  111 tagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcattt 181  Q
    |||||||| |||||||||  || |||||||||||||||||||||   ||| ||||||||||||||||||||    
T  21714865 tagatgtaatgaggatgatattacgttgaagatcaagaagatgaaagggtgtctctaactgtgactcattt 21714795  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 21786190 - 21786120
Alignment:
Q  111 tagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcattt 181  Q
    |||||||| |||||||||  || || ||||||||||||||||||   ||| ||||||||||||||||||||    
T  21786190 tagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcattt 21786120  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 21792661 - 21792583
Alignment:
Q  101 accttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcat 179  Q
    |||||||||||||||| ||||||||| | ||| || || ||||||||||||||| | |||  ||||||| |||||||||    
T  21792661 accttggaattagatgcagtgaggatcattttacgatgcagatcaagaagatgattgggtggctctaacagtgactcat 21792583  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 25986 - 25954
Alignment:
Q  171 gtgactcatttggtactggtattgatacactat 203  Q
    ||||||||||||||| |||||||||||||||||    
T  25986 gtgactcatttggtaatggtattgatacactat 25954  T

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