View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4151_low_13 (Length: 240)
Name: NF4151_low_13
Description: NF4151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4151_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 29135687 - 29135476
Alignment:
| Q |
12 |
cacagacacaaaaacacactctcttttgaagtagctagagagaatgaggagttgtgattggatgaaatgaaagatacttagttactatataataactaga |
111 |
Q |
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| T |
29135687 |
cacaaacacaaaaacacactcttttttgaagtagctagagagaatgaggagttttgattggatgaaatgaaagatacttagttactatataataactaga |
29135588 |
T |
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| Q |
112 |
tttcttttcatgctttccagctagaccaccaatgtaacttaaaaaacaataatgtttcctagtaatccattttgctacgcatacgacatctggttaatca |
211 |
Q |
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| T |
29135587 |
tttcttctgatgctttccagctagaccaccaatgtaacttaaaaaacaataatgtttcctagtaatccatttagctacgcatacgacatctggttaatca |
29135488 |
T |
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| Q |
212 |
tatgcaaaaaat |
223 |
Q |
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|||||||||||| |
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| T |
29135487 |
tatgcaaaaaat |
29135476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 29135386 - 29135305
Alignment:
| Q |
141 |
caatgtaacttaa-aaaacaataatgtttcctagtaatccattttgctacgcatacgacatctggttaatcatatgcaaaaaa |
222 |
Q |
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||||||||||||| |||| || ||||||||| | ||||||||||| ||| ||| ||||||||||||||||| ||| |||||| |
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| T |
29135386 |
caatgtaacttaataaaataaaaatgtttcccactaatccattttt-tacacatgcgacatctggttaatcacatgaaaaaaa |
29135305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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