View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4151_low_2 (Length: 523)
Name: NF4151_low_2
Description: NF4151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4151_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 35801067 - 35801363
Alignment:
| Q |
1 |
aggatgacgggtatgatgcgaccaaattgcacaagactccacaaagtaaacctccacctcagtaattttagggaataactctagttgtggtccatgacat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
35801067 |
aggatgacgggtatgatgcgaccaaattgcacaagactccacagagtaaacctccacctcagtaattttagggaataa--ctagtcgtggtccatgacat |
35801164 |
T |
|
| Q |
101 |
gaacattgttacggaactagatctttacctcttgggatgcccggggtaattgtatttttgaagtaataatttccaaaaatgtgtaattatatttagaatt |
200 |
Q |
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|||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35801165 |
gaacattgttacggaactggatattta-------------------gaattgtatttttgaagtaataatttccaaaaatgtgtaatgatatttagaatt |
35801245 |
T |
|
| Q |
201 |
agagnnnnnnnnacgagtgtcctaaaaactttttaaggattctaaataataaagaagttattccaatcaacttattttaaaagttaaaaatttcaatttc |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
35801246 |
agagtttttcttacgagtgtcctaaaaactttttaaggattctaaataataaagaagttattccaatcaacttattttaaaagttaaaaattttaaattc |
35801345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 356 - 508
Target Start/End: Original strand, 35801401 - 35801553
Alignment:
| Q |
356 |
gaatgtcttcaaagcactcattagcattttctttagaattattgaaaacagattgagataaaaaatgttgctacttagaatgatacaatgctatactata |
455 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35801401 |
gaatgtcttcaaagaactcattagcattttctttagaattattgaaaacagattgagataaaaaatgttgctacttagaatgatacaatgctatactata |
35801500 |
T |
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| Q |
456 |
gtttaagcattgatatcctattaaaacatgtattaaattttaatcaatctcat |
508 |
Q |
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| T |
35801501 |
gtttaagcattgatatcctattaaaacatgtattaaattttaatcaatctcat |
35801553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 54848619 - 54848555
Alignment:
| Q |
1 |
aggatgacgggtatgatgcgaccaaattgcacaagactccacaaagtaaacctccacctcagtaa |
65 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
54848619 |
aggatgacgggtatgatgtgaccaaattgcacaagactccgcagagtaatcctccacctcagtaa |
54848555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 54848494 - 54848457
Alignment:
| Q |
93 |
catgacatgaacattgttacggaactagatctttacct |
130 |
Q |
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| T |
54848494 |
catgacatgaacattgttatggaactacatctttacct |
54848457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 35438132 - 35438069
Alignment:
| Q |
248 |
aataaagaagttattccaatcaacttattttaaaagttaaaaatttcaatttccagtgtattga |
311 |
Q |
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|||||||||||||||||||| | |||||| |||||||||| ||||| ||||||| || ||||| |
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| T |
35438132 |
aataaagaagttattccaatgcatttatttaaaaagttaaacatttcgatttccaatgcattga |
35438069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 9892930 - 9892898
Alignment:
| Q |
93 |
catgacatgaacattgttacggaactagatctt |
125 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
9892930 |
catgacgtgaacattgttacggaactagatctt |
9892898 |
T |
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