View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4152_high_3 (Length: 263)
Name: NF4152_high_3
Description: NF4152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4152_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 6871283 - 6871533
Alignment:
| Q |
1 |
ataactaactactaacatttgtcattcnnnnnnntaaaataaatttggcatgccgttaattaaatgtgcagcagtgaaaaccacatcaccccataattaa |
100 |
Q |
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| T |
6871283 |
ataactaactactaacatttgtcatttaaaaaaataaaataaatttggcatgccgttaattaaatgtgcagtagtgaaaaccacatcaccccataattaa |
6871382 |
T |
|
| Q |
101 |
ttgttaggctttgattttgagaaactcagaattttattttaaagatatatgtattacaattgaaaattcatttaattttggttttgtgaataatgaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6871383 |
ttgttaggctttgattttgagaaactcagaattttattttaaagatatatgtattacaattgaaaattcatttaattttggttttgtgaataatgaaaaa |
6871482 |
T |
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| Q |
201 |
acttcgtaaattttatagtggctgatgttagttttccctttttacacaggt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6871483 |
acttcgtaaattttatagtggctgatgttagttttccctttttacacaggt |
6871533 |
T |
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