View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4152_low_2 (Length: 309)
Name: NF4152_low_2
Description: NF4152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4152_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 29326627 - 29326330
Alignment:
| Q |
1 |
acataaccgcctgggaactgaggaagctattaatcagatgatggacttcatagttcaacatgagggaatggaaattggaactgaggaagcatcaagcact |
100 |
Q |
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| T |
29326627 |
acataaccgcctgggaactgaggaagctattaatcagatgatggacttcatagttcaacatgagggaatggaaattggaactgaggaagcatcaagcact |
29326528 |
T |
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| Q |
101 |
ataccttcctctagttattaggcttcaattggaactgaaggaggtgcatgattttttggtttcaaattgaattgtacaatagaaaaagaaaggaagattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29326527 |
ataccttcctctagttattaggcttcaattggaactgaaggaggtgcatgattttttgatttcaaattgaattgtacaatagaaaaagaaaggaagattt |
29326428 |
T |
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| Q |
201 |
caatcttccattgtgtaaaggtacagaaagatttgtacatacaattacgaataatataaccacatttttacatgcaaataatactaatgggcaatagc |
298 |
Q |
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| T |
29326427 |
caatcttccattgtgtaaaggtacagaaagatttgtacatacaattacgaataatataaccacatttttacatgcaaataataataatgggcaatagc |
29326330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 29316254 - 29316158
Alignment:
| Q |
4 |
taaccgcctgggaactgaggaagctattaatcagatgatggacttcatagttcaacatgagggaatggaaattggaactgaggaagcatcaagcact |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
29316254 |
taaccgcctgggaagtgaggaagctattaatcagatgtctgacttcatagatcaacatgatggaatggaaagtggaactgaggaagcatcaagcact |
29316158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 29297987 - 29297922
Alignment:
| Q |
12 |
tgggaactgaggaagctattaatcagatgatggacttcatagttcaacatgagggaatggaaattg |
77 |
Q |
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| T |
29297987 |
tgggaactgaggaagctattaatcagatgattgatttcatagatcaacatggtgggatggaaattg |
29297922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 29297791 - 29297732
Alignment:
| Q |
186 |
aagaaaggaagatttcaatctt-ccattgtgtaaaggtacagaaagatttgtacatacaa |
244 |
Q |
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| T |
29297791 |
aagaaaggaaggttttaatctttccaatgtgtaaaggtacagcaacatttgtacatacaa |
29297732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 29316117 - 29316053
Alignment:
| Q |
165 |
aattgaattgtacaatagaaaa--agaaa-ggaagatttcaatc-ttccattgtgtaaaggtaca |
225 |
Q |
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| T |
29316117 |
aattgaattgtacaatagacaataagaaaaggaagatttcaatctttccaatgtgtaaaggtaca |
29316053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 42285788 - 42286082
Alignment:
| Q |
1 |
acataaccgcctgggaactgaggaagctattaatcagatgatggacttcatagttcaacatgagggaatggaaattggaactgaggaagcatcaagcact |
100 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42285788 |
acataaccgcctggggactgaggaagctactaatcagatgattgacttcatagatcaacatgatggaatggaaattggaactgaggaagcatcaagcact |
42285887 |
T |
|
| Q |
101 |
ataccttcctctagttattaggcttcaattggaactgaaggaggtgcatgattttttggtttcaaattgaattgtacaat---agaaaaagaaaggaaga |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42285888 |
atacgttcctctagttattaggcttcaattggaactgaaggaggtgtatgattttttggtttcaaattgaattgtacaatagaagaaaaagaaaggaaga |
42285987 |
T |
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| Q |
198 |
tttcaatcttccattgtgtaaaggtacagaaagatttgtacatacaattacgaataatataaccacatttttacatgcaaataatactaatgggcaa |
294 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42285988 |
tttcaa--ttccaatgtgtaaaggtacagaaagatttgtacatacaattacgaataatataaccacatttgcacatgcaaataatactaatgggcaa |
42286082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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