View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4152_low_6 (Length: 231)
Name: NF4152_low_6
Description: NF4152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4152_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 9384777 - 9384580
Alignment:
| Q |
19 |
tagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttgaatatgttagctcattaggctaacataggtggagtaaaaat |
118 |
Q |
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| T |
9384777 |
tagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttgaatatgttaactcattaggctaacataggtggagtaaaaat |
9384678 |
T |
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| Q |
119 |
taatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaatgagagcttcatgttttagaattatattattggacctttg |
216 |
Q |
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| T |
9384677 |
taatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaacgagagcttcatgttttagaattatattattggacctttg |
9384580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 31947863 - 31947700
Alignment:
| Q |
19 |
tagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttgaatatgttagctcattaggctaacataggtggagtaaaaat |
118 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
31947863 |
tagaaggtagattagattgcatatttagctgtttggtaaaaaatagagtgttgtgtttaaatatgttagctcattaggctaacataggtagagtaaaaat |
31947764 |
T |
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| Q |
119 |
taatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaatgagag |
182 |
Q |
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| T |
31947763 |
taatgtccttttgtaaatgagagaatgatcttgtagtaaaattcaatccatgtttgaatgagag |
31947700 |
T |
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