View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4153_high_10 (Length: 202)
Name: NF4153_high_10
Description: NF4153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4153_high_10 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 1945334 - 1945524
Alignment:
| Q |
12 |
gagcagagagtgtcaattcatttgtataacaatgtccaaataacttttagttaatgcatatcttcttcctatttattgtctctttataagtagtatatta |
111 |
Q |
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| T |
1945334 |
gagcagaaagtgtcaattcatttgtataacaatgtccaaataacttttagttaatgcatatcttcttcctatttattgtctctttataagtagtatatta |
1945433 |
T |
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| Q |
112 |
cctgatgaataaagtataacaatattaccctatttctttctacaaataagataatcttcataatttaacagttgagtagaattggtgtata |
202 |
Q |
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| T |
1945434 |
cctgatgaataaagtataacaatattaccctatttctttctacaaataagataatcttcataatttaacagttgagtagaattggtgtata |
1945524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 2010917 - 2010816
Alignment:
| Q |
99 |
aagtagtatattacctgatgaataaagtataacaatatt-accctatttctttctacaaataagataatcttcataatttaacagttgagtagaattggt |
197 |
Q |
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| T |
2010917 |
aagtagtatattaactgatgaataaagtataacaatattcaccctatttctttctacaaataagacaatcatcataatttgacagttgagtagaattggt |
2010818 |
T |
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| Q |
198 |
gt |
199 |
Q |
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| T |
2010817 |
gt |
2010816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 1965793 - 1965856
Alignment:
| Q |
113 |
ctgatgaataaagtataacaatattaccctatttctttctacaaataagataatcttcataattt |
177 |
Q |
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| T |
1965793 |
ctgatgaataaagtataacaat-tcaccctatttctttctacaaataacataatcatcataattt |
1965856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 1965672 - 1965707
Alignment:
| Q |
63 |
taatgcatatcttcttcctatttattgtctctttat |
98 |
Q |
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| T |
1965672 |
taatgcatatcttcttcctatttattgtctctttat |
1965707 |
T |
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