View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4153_high_5 (Length: 252)
Name: NF4153_high_5
Description: NF4153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4153_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 5574930 - 5574985
Alignment:
| Q |
193 |
attaacaattgtaaaaaccaactcaactatcatcattatcatccacttaaatttga |
248 |
Q |
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| T |
5574930 |
attaacaattgtaaaaaccaactcaactatcatcattatcatccacttaaatttga |
5574985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 5570227 - 5570285
Alignment:
| Q |
74 |
caacaaattctcatcactatttttcagctcattcatctctttggctgaataagagaagg |
132 |
Q |
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| T |
5570227 |
caacaaattctcatcactatttttcagctcattcatctctttgactgaataagagaagg |
5570285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 5579521 - 5579598
Alignment:
| Q |
56 |
tatgccataaaacttgctcaacaaattctcatcactatttttcagctcattcatctctttggctgaataagagaaggca |
134 |
Q |
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| T |
5579521 |
tatgccagaaaacatgtgcaacaatttctcatcact-tttttcagctcattcatctctttggctgactaagagaaggca |
5579598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 5572015 - 5572077
Alignment:
| Q |
176 |
gtttattctacttagccattaacaattgtaaaaaccaactcaactatcatcattatcatccac |
238 |
Q |
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| T |
5572015 |
gtttattccacatatccattaacaattgtaaaaaccaacttaattatcatcattatcatccac |
5572077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 5579653 - 5579719
Alignment:
| Q |
176 |
gtttattctacttagccattaacaattgtaaaaaccaactcaactatcatcattatcatccacttaa |
242 |
Q |
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| T |
5579653 |
gtttattcaacctacccattaacaattgtaaaaaccaacttaattatcatcattatcatccgcttaa |
5579719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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