View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4153_high_6 (Length: 251)
Name: NF4153_high_6
Description: NF4153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4153_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 5574930 - 5574985
Alignment:
| Q |
192 |
attaacaattgtaaaaaccaactcaactatcatcattatcatccacttaaatttga |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5574930 |
attaacaattgtaaaaaccaactcaactatcatcattatcatccacttaaatttga |
5574985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 5570227 - 5570285
Alignment:
| Q |
73 |
caacaaattctcatcactatttttcagctcattcatctctttggctgaataagagaagg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5570227 |
caacaaattctcatcactatttttcagctcattcatctctttgactgaataagagaagg |
5570285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 5579521 - 5579598
Alignment:
| Q |
55 |
tatgccataaaacttgctcaacaaattctcatcactatttttcagctcattcatctctttggctgaataagagaaggca |
133 |
Q |
| |
|
||||||| ||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5579521 |
tatgccagaaaacatgtgcaacaatttctcatcact-tttttcagctcattcatctctttggctgactaagagaaggca |
5579598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 5572015 - 5572077
Alignment:
| Q |
175 |
gtttattctacttagccattaacaattgtaaaaaccaactcaactatcatcattatcatccac |
237 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
5572015 |
gtttattccacatatccattaacaattgtaaaaaccaacttaattatcatcattatcatccac |
5572077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 5579653 - 5579719
Alignment:
| Q |
175 |
gtttattctacttagccattaacaattgtaaaaaccaactcaactatcatcattatcatccacttaa |
241 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
5579653 |
gtttattcaacctacccattaacaattgtaaaaaccaacttaattatcatcattatcatccgcttaa |
5579719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University