View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4153_low_1 (Length: 467)
Name: NF4153_low_1
Description: NF4153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4153_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 48062952 - 48063413
Alignment:
| Q |
1 |
tgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatcagattaacttaagcattttttctgctatacatctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48062952 |
tgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatcagat-aacttaagcattttttctgctatacatctac |
48063050 |
T |
|
| Q |
101 |
tactgattttcattatgcaatttggtatgctattgagtttgttcctcttaatgacaacatgcttgactattggtctgcgaggccgagagtcgtgatggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48063051 |
tactgattttcattatgcaatttggtatgctattgagtttgttcctcttaatgacaacatgcttgactattggtctgcgaggccgagagtcgtgatggta |
48063150 |
T |
|
| Q |
201 |
gtactagtaatacaaaaataaaagcaacgattcatcccctggtgcaaagcacaggtgtctatgtgaaaacaatataagcattagcttaccctctcaatgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48063151 |
gtactagtaatacaaaaataaaagcaacgattcatcccctggtgcaaagcacaggtatctatgtgaaaacaatataagcattagcttaccctctcaatgc |
48063250 |
T |
|
| Q |
301 |
tgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccacaattggattctcgctctgcatgcaagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48063251 |
tgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccacaattggattctcactctgcatgcaagt |
48063350 |
T |
|
| Q |
401 |
tgatttcagtcaacaaatatctaagcacataaaaacaagtactttaaccatttcatttcactc |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48063351 |
tgatttcagtcaacaaatatctaagcacataaaaacaagtactttaaccatttcatttcactc |
48063413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 48100243 - 48100355
Alignment:
| Q |
282 |
tagcttaccctctcaatgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccacaattggat |
381 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||| |||||||| | ||||||||||||||||||||||||||| | |||||| ||||||| |||||| |
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| T |
48100243 |
tagcttaccctctcaacgctatcgtcttgctgtgatctccattgtttcttggtgaatggttgtaaggagacactatcagcccatagttccacagttggat |
48100342 |
T |
|
| Q |
382 |
tctcgctctgcat |
394 |
Q |
| |
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|||||| |||||| |
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| T |
48100343 |
tctcgcactgcat |
48100355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 48067193 - 48067287
Alignment:
| Q |
280 |
attagcttaccctctcaatgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccaca |
374 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |||||||| | || ||||||||||||| |||||||||| | ||||||||||||| |
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| T |
48067193 |
attagcttaccctctcaatgctgtcggcttggtgtgatctccattgtgttttgttgaatggttgtaaagagacactatcagtccataattccaca |
48067287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 48099997 - 48100050
Alignment:
| Q |
12 |
gatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatca |
65 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||||||| || |||||||||| |
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| T |
48099997 |
gatgagttacatggaatctcaccttgctcttgcgtacctgcagtttataaatca |
48100050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 374
Target Start/End: Original strand, 48106909 - 48107005
Alignment:
| Q |
278 |
gcattagcttaccctctcaatgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccaca |
374 |
Q |
| |
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||||||||||||||| ||||| || | ||||||||||| ||||||| || | | || |||||||| ||||| ||||||| | |||||| ||||||| |
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| T |
48106909 |
gcattagcttaccctttcaatattgttgtcttggtgtgatctccattcctttttagtaaatggttgcaaggacacactatcagcccatatttccaca |
48107005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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